UHGV-0355547

Genome information

vOTU vOTU-012042

Genome length 18,403 bps

CDS count 23

Completeness 99.90% (high-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0355547
vOTU ID	vOTU-012042
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_130_round8-12~3866242
BioSample	SAMEA3488723
Country	Malawi
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.52
Jumbo phage	No

Genome content
Genome length	18,403 bps
GC content	52.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	94.52%
Average CDS length	757.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0355547_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0355547_2	PHROG	phrog_291	endolysin	lysis
UHGV-0355547_2	UniRef90	UniRef90_A0A4P6DVZ7	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0355547_2	eggNOG-mapper	1394176.AWUO01000014_gene647	Glycosyl hydrolases family 25	NA
UHGV-0355547_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0355547_2	Pfam	PF01476	LysM domain	LysM
UHGV-0355547_2	COG	COG1388	LysM repeat	NA
UHGV-0355547_2	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0355547_3	PHROG	phrog_199	holin	lysis
UHGV-0355547_3	UniRef90	UniRef90_UPI00123224AD	phage holin family protein	NA
UHGV-0355547_3	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0355547_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0355547_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0355547_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0355547_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-0355547_4	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0355547_4	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0355547_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0355547_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0355547_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0355547_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0355547_6	UniRef90	UniRef90_UPI0010FE784F	SGNH/GDSL hydrolase family protein	NA
UHGV-0355547_6	Structural annotation	PF14606, PF08931, NF007819, COG2755	NA	NA
UHGV-0355547_9	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0355547_9	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0355547_9	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0355547_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0355547_10	UniRef90	UniRef90_A0A3G3LXU8	Upper collar protein	NA
UHGV-0355547_10	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0355547_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0355547_10	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0355547_11	PHROG	phrog_2248	tail protein	tail
UHGV-0355547_11	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0355547_11	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0355547_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0355547_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0355547_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0355547_12	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0355547_12	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0355547_12	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0355547_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0355547_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0355547_14	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0355547_14	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0355547_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0355547_14	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0355547_15	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0355547_16	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0355547_16	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0355547_16	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0355547_16	Structural annotation	PF17427	NA	NA
UHGV-0355547_17	Structural annotation	PF17548, MF_00273	NA	NA
UHGV-0355547_19	Structural annotation	PF11680	NA	NA