UHGV-0356465

Genome information

vOTU vOTU-022034

Genome length 54,420 bps

CDS count 69

Completeness 77.99% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0356465
vOTU ID	vOTU-022034
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_158115_round347~1072179
BioSample	SAMN06115538
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.07
Jumbo phage	No

Genome content
Genome length	54,420 bps
GC content	32.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	96.13%
Average CDS length	760.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0356465_1	KOfam	K18779	tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]	NA
UHGV-0356465_1	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0356465_1	UniRef90	UniRef90_E7DN71	Queuosine tRNA-ribosyltransferase	NA
UHGV-0356465_1	eggNOG-mapper	59241.E7DN71_BPDP1	tRNA modification	NA
UHGV-0356465_1	Structural annotation	PF00290, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0356465_2	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0356465_2	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0356465_2	UniRef90	UniRef90_E7DN74	DnaN	NA
UHGV-0356465_2	eggNOG-mapper	59241.E7DN74_BPDP1	3'-5' exonuclease activity	NA
UHGV-0356465_2	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0356465_2	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0356465_2	Structural annotation	PF00712, PF02768, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0356465_3	KOfam	K07464	cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]	NA
UHGV-0356465_3	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0356465_3	UniRef90	UniRef90_E7DN75	RecB	NA
UHGV-0356465_3	eggNOG-mapper	871584.D9ZNH8_9CAUD	nuclease activity	NA
UHGV-0356465_3	Structural annotation	PF10926, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0356465_4	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0356465_4	UniRef90	UniRef90_UPI001C27770B	Holliday junction resolvase RecU	NA
UHGV-0356465_4	eggNOG-mapper	59241.E7DN76_BPDP1	Recombination protein U	NA
UHGV-0356465_4	Pfam	PF03838	Recombination protein U	RecU
UHGV-0356465_4	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0356465_6	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0356465_6	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0356465_6	UniRef90	UniRef90_I1TK04	dUTPase domain-containing protein	NA
UHGV-0356465_6	eggNOG-mapper	1147137.I1TK04_9CAUD	dUTPase	NA
UHGV-0356465_6	Pfam	PF00692	dUTPase	dUTPase
UHGV-0356465_6	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0356465_7	KOfam	K11991	tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]	NA
UHGV-0356465_7	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0356465_7	UniRef90	UniRef90_A0A2G6EFA6	tRNA-specific adenosine deaminase	NA
UHGV-0356465_7	eggNOG-mapper	1123009.AUID01000009_gene490	MafB19-like deaminase	NA
UHGV-0356465_7	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0356465_7	COG	COG0590	tRNA(Arg) A34 adenosine deaminase TadA	NA
UHGV-0356465_7	Structural annotation	PF14437, MF_00972, NF008113, COG0590	NA	NA
UHGV-0356465_8	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0356465_8	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0356465_8	UniRef90	UniRef90_D9ZNJ5	Putative RecA protein	NA
UHGV-0356465_8	eggNOG-mapper	871584.D9ZNJ5_9CAUD	DNA-dependent ATPase activity	NA
UHGV-0356465_8	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0356465_8	Structural annotation	PF00154, PF21096, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0356465_9	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0356465_9	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0356465_9	eggNOG-mapper	469596.HMPREF9488_01207	Belongs to the sigma-70 factor family	NA
UHGV-0356465_9	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0356465_9	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0356465_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0356465_9	Structural annotation	PF07638, MF_02064, NF006158, COG1191	NA	NA
UHGV-0356465_10	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0356465_10	eggNOG-mapper	59241.E7DN89_BPDP1	NA	NA
UHGV-0356465_10	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0356465_12	KOfam	K02343	dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]	NA
UHGV-0356465_12	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0356465_12	UniRef90	UniRef90_A0A1U9WR94	DNA polymerase III subunits gamma and tau	NA
UHGV-0356465_12	eggNOG-mapper	59241.E7DN81_BPDP1	four-way junction helicase activity	NA
UHGV-0356465_12	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0356465_12	Pfam	PF12169	DNA polymerase III subunits gamma and tau domain III	DNA_pol3_gamma3
UHGV-0356465_12	NCBIFam	TIGR02397.1	DNA polymerase III subunit gamma/tau	NA
UHGV-0356465_12	Structural annotation	PF13177, PF12169, MF_01509, TIGR02397, COG2812	NA	NA
UHGV-0356465_13	KOfam	K02341	holB; DNA polymerase III subunit delta' [EC:2.7.7.7]	NA
UHGV-0356465_13	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0356465_13	UniRef90	UniRef90_D9ZNJ0	Putative DNA polymerase III	NA
UHGV-0356465_13	eggNOG-mapper	871584.D9ZNJ0_9CAUD	DNA polymerase III, delta subunit	NA
UHGV-0356465_13	Pfam	PF13177	DNA polymerase III, delta subunit	DNA_pol3_delta2
UHGV-0356465_13	Structural annotation	PF13177, MF_04162, NF004047, COG2812	NA	NA
UHGV-0356465_16	KOfam	K02340	holA; DNA polymerase III subunit delta [EC:2.7.7.7]	NA
UHGV-0356465_16	PHROG	phrog_20214	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0356465_16	UniRef90	UniRef90_A0A1W7AF03	DNA polymerase III subunit gamma	NA
UHGV-0356465_16	eggNOG-mapper	59241.E7DN83_BPDP1	NA	NA
UHGV-0356465_16	Pfam	PF21694	DNA polymerase III delta subunit, C-terminal domain	DNA_pol3_delta_C
UHGV-0356465_16	Structural annotation	PF21694, PF06144, MF_01509, NF005134, COG1466	NA	NA
UHGV-0356465_17	Structural annotation	PF17399	NA	NA
UHGV-0356465_19	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0356465_19	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0356465_19	UniRef90	UniRef90_UPI0018AA0C72	FAD-dependent thymidylate synthase	NA
UHGV-0356465_19	eggNOG-mapper	1124982.MSI_00390	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0356465_19	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0356465_19	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0356465_19	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0356465_25	PHROG	phrog_1485	NA	unknown function
UHGV-0356465_25	UniRef90	UniRef90_UPI0011599446	NA	NA
UHGV-0356465_25	eggNOG-mapper	445335.CBN_1364	NA	NA
UHGV-0356465_25	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0356465_30	Structural annotation	PF10925, TIGR03515	NA	NA
UHGV-0356465_33	PHROG	phrog_9079	NA	unknown function
UHGV-0356465_33	eggNOG-mapper	1391646.AVSU01000053_gene947	NA	NA
UHGV-0356465_34	PHROG	phrog_23746	NA	unknown function
UHGV-0356465_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0356465_35	PHROG	phrog_10250	NA	unknown function
UHGV-0356465_35	UniRef90	UniRef90_UPI001E406D12	PBSX family phage terminase large subunit	NA
UHGV-0356465_35	eggNOG-mapper	59241.E7DNA1_BPDP1	Terminase-like family	NA
UHGV-0356465_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0356465_35	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0356465_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0356465_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0356465_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0356465_36	UniRef90	UniRef90_UPI001E369C6C	phage portal protein	NA
UHGV-0356465_36	eggNOG-mapper	59241.E7DNA2_BPDP1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0356465_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0356465_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0356465_38	PHROG	phrog_35456	NA	unknown function
UHGV-0356465_38	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0356465_38	COG	COG0322	Excinuclease UvrABC, nuclease subunit	NA
UHGV-0356465_39	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0356465_39	eggNOG-mapper	59241.E7DNA4_BPDP1	Phage Mu protein F like protein	NA
UHGV-0356465_39	Structural annotation	PF06152, NF040688	NA	NA
UHGV-0356465_41	PHROG	phrog_1233	NA	unknown function
UHGV-0356465_41	UniRef90	UniRef90_UPI001C8B04BF	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0356465_41	eggNOG-mapper	1151292.QEW_0697	NA	NA
UHGV-0356465_41	Structural annotation	PF13058	NA	NA
UHGV-0356465_42	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0356465_42	UniRef90	UniRef90_UPI001E38E233	phage scaffolding protein	NA
UHGV-0356465_42	eggNOG-mapper	1302286.BAOT01000008_gene600	Phage minor structural protein GP20	NA
UHGV-0356465_42	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0356465_42	Structural annotation	PF06810	NA	NA
UHGV-0356465_43	Structural annotation	PF02924	NA	NA
UHGV-0356465_44	PHROG	phrog_29	major head protein	head and packaging
UHGV-0356465_44	UniRef90	UniRef90_UPI001D166481	major capsid protein	NA
UHGV-0356465_44	eggNOG-mapper	59241.E7DNA7_BPDP1	Phage major capsid protein E	NA
UHGV-0356465_44	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0356465_44	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0356465_45	PHROG	phrog_4020	NA	unknown function
UHGV-0356465_45	eggNOG-mapper	536232.CLM_2521	NA	NA
UHGV-0356465_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0356465_47	eggNOG-mapper	59241.E7DNB1_BPDP1	NA	NA
UHGV-0356465_47	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0356465_48	Structural annotation	PF05657	NA	NA
UHGV-0356465_49	PHROG	phrog_6686	tail tube protein	tail
UHGV-0356465_49	UniRef90	UniRef90_E7DNB3	Structural protein	NA
UHGV-0356465_49	eggNOG-mapper	59241.E7DNB3_BPDP1	NA	NA
UHGV-0356465_49	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0356465_50	PHROG	phrog_6280	NA	unknown function
UHGV-0356465_50	UniRef90	UniRef90_W6NHB1	Conserved protein	NA
UHGV-0356465_50	eggNOG-mapper	1121342.AUCO01000012_gene1687	NA	NA
UHGV-0356465_51	PHROG	phrog_6541	NA	unknown function
UHGV-0356465_52	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0356465_52	UniRef90	UniRef90_UPI001E29D389	phage tail tape measure protein	NA
UHGV-0356465_52	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-0356465_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0356465_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0356465_52	COG	COG5283	Phage-related tail protein	NA
UHGV-0356465_52	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0356465_53	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0356465_53	UniRef90	UniRef90_A0A1I3MEI4	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0356465_53	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0356465_53	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0356465_53	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0356465_53	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0356465_53	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0356465_54	PHROG	phrog_6253	minor tail protein	tail
UHGV-0356465_54	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-0356465_54	eggNOG-mapper	1329516.JPST01000005_gene1273	Prophage endopeptidase tail	NA
UHGV-0356465_54	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0356465_54	COG	COG4926	Phage-related protein	NA
UHGV-0356465_54	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-0356465_55	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0356465_55	PHROG	phrog_38044	NA	unknown function
UHGV-0356465_55	eggNOG-mapper	1211844.CBLM010000023_gene978	cellulase activity	NA
UHGV-0356465_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0356465_55	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0356465_56	eggNOG-mapper	700598.Niako_0669	PFAM Glycoside hydrolase, family 16	NA
UHGV-0356465_56	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0356465_56	Structural annotation	PF03935, PF19077, PF18998, PF01105, NF041449, NF033814, NF033675, COG2273, COG2372	NA	NA
UHGV-0356465_57	PHROG	phrog_21973	tail protein	tail
UHGV-0356465_57	eggNOG-mapper	1329516.JPST01000016_gene406	NA	NA
UHGV-0356465_57	COG	COG4926	Phage-related protein	NA
UHGV-0356465_57	Structural annotation	PF13157, PF13229, NF033679	NA	NA
UHGV-0356465_60	UniRef90	UniRef90_B1BPS3	Holin, phage phi LC3 family	NA
UHGV-0356465_60	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-0356465_60	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0356465_60	COG	COG5546	NA	NA
UHGV-0356465_61	PHROG	phrog_25468	NA	unknown function
UHGV-0356465_61	Structural annotation	PF08481	NA	NA
UHGV-0356465_62	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0356465_62	PHROG	phrog_833	endolysin	lysis
UHGV-0356465_62	UniRef90	UniRef90_UPI0018AA2066	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0356465_62	eggNOG-mapper	1189612.A33Q_2308	Bacterial SH3 domain homologues	NA
UHGV-0356465_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0356465_62	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0356465_62	COG	COG3103	NA	NA
UHGV-0356465_62	Structural annotation	PF01510, PF13457, MF_04111, NF008758, NF033202, COG4991, COG3023	NA	NA
UHGV-0356465_63	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0356465_63	UniRef90	UniRef90_A0A5J6T6P1	Amidoligase	NA
UHGV-0356465_63	eggNOG-mapper	370438.PTH_2197	Putative amidoligase enzyme	NA
UHGV-0356465_63	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0356465_63	Structural annotation	PF12224	NA	NA
UHGV-0356465_65	Structural annotation	PF13973, MF_01354, TIGR00739, COG4481	NA	NA
UHGV-0356465_66	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0356465_66	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0356465_66	UniRef90	UniRef90_E7DNC5	Putative ATP-dependent helicase	NA
UHGV-0356465_66	eggNOG-mapper	59241.E7DNC5_BPDP1	helicase activity	NA
UHGV-0356465_66	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0356465_66	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0356465_66	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0356465_66	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0356465_67	Structural annotation	PF13411, NF007069, COG3311	NA	NA
UHGV-0356465_69	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0356465_69	UniRef90	UniRef90_A0A558ZKR1	Phg_2220_C domain-containing protein (Fragment)	NA
UHGV-0356465_69	eggNOG-mapper	457396.CSBG_01034	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0356465_69	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0356465_69	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0356465_69	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA