UHGV-0357185

Genome information

Genome length 34,735 bps

CDS count 41

Completeness 86.04% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0357185
vOTU ID	vOTU-018571
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR7905336_141_38806_round1256~3477310
BioSample	NA
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.71
Jumbo phage	No

Genome content
Genome length	34,735 bps
GC content	30.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	87.61%
Average CDS length	743.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0357185_1	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0357185_1	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0357185_1	UniRef90	UniRef90_UPI000F8F56DD	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0357185_1	eggNOG-mapper	1235802.C823_05698	DnaD domain protein	NA
UHGV-0357185_1	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0357185_1	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0357185_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0357185_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0357185_2	UniRef90	UniRef90_UPI0018D1E8FC	ERF family protein	NA
UHGV-0357185_2	eggNOG-mapper	536232.CLM_1632	ERF superfamily	NA
UHGV-0357185_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0357185_2	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0357185_3	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0357185_3	UniRef90	UniRef90_A0A8I2ANF6	Siphovirus Gp157 family protein	NA
UHGV-0357185_3	eggNOG-mapper	1582154.A0A0A8WJQ2_9CAUD	Siphovirus Gp157	NA
UHGV-0357185_3	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0357185_3	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0357185_4	Structural annotation	PF01765	NA	NA
UHGV-0357185_6	PHROG	phrog_4370	excisionase	integration and excision
UHGV-0357185_6	UniRef90	UniRef90_A0A1I3QKH2	Helix-turn-helix domain-containing protein	NA
UHGV-0357185_7	Structural annotation	PF12092	NA	NA
UHGV-0357185_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0357185_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0357185_9	UniRef90	UniRef90_UPI0011059D32	phage antirepressor	NA
UHGV-0357185_9	eggNOG-mapper	1444310.JANV01000004_gene2690	Phage antirepressor protein KilAC domain	NA
UHGV-0357185_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0357185_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0357185_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0357185_9	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0357185_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0357185_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0357185_10	UniRef90	UniRef90_A0A1C5YYW2	Helix-turn-helix domain	NA
UHGV-0357185_10	eggNOG-mapper	1293048.CBMB010000001_gene317	Transcriptional regulators	NA
UHGV-0357185_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0357185_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0357185_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0357185_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0357185_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0357185_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0357185_11	UniRef90	UniRef90_A0A1C5YZ84	HTH-type transcriptional regulator immR	NA
UHGV-0357185_11	eggNOG-mapper	1151292.QEW_2480	sequence-specific DNA binding	NA
UHGV-0357185_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0357185_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0357185_13	PHROG	phrog_23726	NA	unknown function
UHGV-0357185_13	eggNOG-mapper	293826.Amet_2441	cell wall binding repeat	NA
UHGV-0357185_13	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0357185_14	KOfam	K14059	int; integrase	NA
UHGV-0357185_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0357185_14	UniRef90	UniRef90_A0A1C5Z094	Integrase	NA
UHGV-0357185_14	eggNOG-mapper	272563.CD630_25190	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0357185_14	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0357185_14	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0357185_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0357185_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0357185_14	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0357185_15	AcrCatalog	cluster_37489	NA	NA
UHGV-0357185_16	PHROG	phrog_2329	NA	unknown function
UHGV-0357185_16	UniRef90	UniRef90_A0A374KPC9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0357185_16	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0357185_16	Structural annotation	PF04014, NF008463, COG2336	NA	NA
UHGV-0357185_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0357185_18	PHROG	phrog_3088	amidase	lysis
UHGV-0357185_18	UniRef90	UniRef90_A0A1C5YVD6	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0357185_18	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0357185_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0357185_18	Pfam	PF19087	NA	DUF5776
UHGV-0357185_18	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0357185_18	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-0357185_19	PHROG	phrog_1129	holin	lysis
UHGV-0357185_19	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-0357185_19	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0357185_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0357185_19	Structural annotation	PF06946	NA	NA
UHGV-0357185_20	PHROG	phrog_1193	hemolysin	other
UHGV-0357185_20	UniRef90	UniRef90_A0A1C5YVE2	Haemolysin XhlA	NA
UHGV-0357185_20	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0357185_21	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0357185_21	UniRef90	UniRef90_A0A843FBH5	Metallophosphoesterase	NA
UHGV-0357185_21	eggNOG-mapper	646529.Desaci_4219	Calcineurin-like phosphoesterase	NA
UHGV-0357185_21	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0357185_21	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0357185_22	PHROG	phrog_16573	NA	unknown function
UHGV-0357185_22	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0357185_23	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0357185_23	PHROG	phrog_13289	tail protein	tail
UHGV-0357185_23	UniRef90	UniRef90_UPI0011CA3AC4	SH3 domain-containing protein	NA
UHGV-0357185_23	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-0357185_23	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0357185_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0357185_23	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0357185_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0357185_23	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0357185_23	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0357185_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0357185_24	UniRef90	UniRef90_A0A1C5YVW7	Phage-related protein	NA
UHGV-0357185_24	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0357185_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0357185_25	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0357185_25	UniRef90	UniRef90_R5XFK4	Phage tail tape measure protein TP901 family core region	NA
UHGV-0357185_25	eggNOG-mapper	1121296.JONJ01000026_gene2163	Phage tail tape measure protein, TP901 family	NA
UHGV-0357185_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0357185_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0357185_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0357185_26	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0357185_26	UniRef90	UniRef90_UPI0005E4DD78	HNH endonuclease	NA
UHGV-0357185_26	eggNOG-mapper	315730.BcerKBAB4_3417	regulation of methylation-dependent chromatin silencing	NA
UHGV-0357185_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0357185_26	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0357185_26	Structural annotation	PF05766	NA	NA
UHGV-0357185_27	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0357185_27	UniRef90	UniRef90_A0A1G9TYM9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0357185_27	eggNOG-mapper	748727.CLJU_c31220	phage tail tape measure protein	NA
UHGV-0357185_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0357185_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0357185_28	PHROG	phrog_6280	NA	unknown function
UHGV-0357185_28	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-0357185_28	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0357185_29	PHROG	phrog_6686	tail tube protein	tail
UHGV-0357185_29	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0357185_29	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0357185_30	PHROG	phrog_7585	NA	unknown function
UHGV-0357185_30	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0357185_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0357185_31	UniRef90	UniRef90_A0A2H4J736	Putative tail component protein	NA
UHGV-0357185_31	eggNOG-mapper	559189.B6SBT4_9CAUD	NA	NA
UHGV-0357185_31	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0357185_32	PHROG	phrog_8435	NA	unknown function
UHGV-0357185_32	eggNOG-mapper	536233.CLO_0543	NA	NA
UHGV-0357185_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0357185_33	PHROG	phrog_4020	NA	unknown function
UHGV-0357185_33	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0357185_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0357185_34	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0357185_34	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0357185_34	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0357185_34	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0357185_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0357185_35	UniRef90	UniRef90_A0A1C5YXG1	Phage minor structural protein GP20	NA
UHGV-0357185_35	eggNOG-mapper	1033740.CAEW01000026_gene530	Phage minor structural protein GP20	NA
UHGV-0357185_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0357185_35	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0357185_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0357185_36	PHROG	phrog_8446	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0357185_36	UniRef90	UniRef90_A0A6M1VMK9	HNH endonuclease	NA
UHGV-0357185_36	eggNOG-mapper	1158610.UC3_02343	regulation of methylation-dependent chromatin silencing	NA
UHGV-0357185_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0357185_36	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0357185_36	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0357185_37	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-0357185_37	UniRef90	UniRef90_A0A1C5YWY9	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0357185_37	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0357185_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0357185_38	UniRef90	UniRef90_A0A1C5YX51	Phage portal protein, putative, A118 family	NA
UHGV-0357185_38	eggNOG-mapper	1443122.Z958_p0036	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0357185_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0357185_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0357185_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0357185_39	PHROG	phrog_10250	NA	unknown function
UHGV-0357185_39	UniRef90	UniRef90_A0A1C5YXC2	Phage terminase, large subunit, PBSX family	NA
UHGV-0357185_39	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0357185_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0357185_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0357185_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0357185_39	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0357185_40	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0357185_40	UniRef90	UniRef90_A0A446I889	Terminase	NA
UHGV-0357185_40	eggNOG-mapper	1158609.I586_00076	Phage terminase small subunit	NA
UHGV-0357185_40	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0357185_40	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0357185_40	COG	COG5484	NA	NA
UHGV-0357185_40	Structural annotation	PF10668, PF02996, NF040601, COG5484	NA	NA
UHGV-0357185_41	PHROG	phrog_9079	NA	unknown function
UHGV-0357185_41	eggNOG-mapper	1391646.AVSU01000053_gene947	NA	NA