UHGV-0357970

Genome information

Genome length 34,439 bps

CDS count 54

Completeness 59.74% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0357970
vOTU ID	vOTU-032438
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5106312_141_54452_round347~762760
BioSample	SAMN06115461
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.45
Jumbo phage	No

Genome content
Genome length	34,439 bps
GC content	48.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.81%
Average CDS length	568.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0357970_1	eggNOG-mapper	386415.NT01CX_2186	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0357970_1	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0357970_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0357970_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0357970_3	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0357970_3	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0357970_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0357970_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0357970_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0357970_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0357970_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0357970_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0357970_4	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0357970_4	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0357970_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0357970_4	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0357970_5	eggNOG-mapper	857293.CAAU_1555	Probable zinc-ribbon domain	NA
UHGV-0357970_5	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0357970_5	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0357970_5	Structural annotation	PF13451	NA	NA
UHGV-0357970_7	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0357970_7	eggNOG-mapper	1410633.JHWR01000008_gene1673	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0357970_7	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0357970_7	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0357970_7	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0357970_8	Structural annotation	PF14143	NA	NA
UHGV-0357970_10	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0357970_10	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0357970_11	Structural annotation	TIGR03826	NA	NA
UHGV-0357970_13	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0357970_13	UniRef90	UniRef90_A0A1Y3XM81	XRE family transcriptional regulator	NA
UHGV-0357970_13	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0357970_13	Structural annotation	TIGR03070	NA	NA
UHGV-0357970_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0357970_14	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0357970_14	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0357970_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0357970_14	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0357970_14	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0357970_18	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0357970_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0357970_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0357970_18	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0357970_19	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0357970_19	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0357970_19	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0357970_19	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0357970_19	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0357970_19	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0357970_19	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0357970_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0357970_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0357970_22	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0357970_22	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0357970_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0357970_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0357970_22	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0357970_23	Pfam	PF04448	NA	DUF551
UHGV-0357970_23	Structural annotation	NF041588	NA	NA
UHGV-0357970_24	Structural annotation	PF07878	NA	NA
UHGV-0357970_25	Structural annotation	NF010188	NA	NA
UHGV-0357970_27	eggNOG-mapper	1415774.U728_1699	NA	NA
UHGV-0357970_28	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0357970_29	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0357970_30	PHROG	phrog_16490	NA	unknown function
UHGV-0357970_30	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0357970_34	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0357970_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0357970_34	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0357970_36	PHROG	phrog_774	NA	unknown function
UHGV-0357970_36	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0357970_37	PHROG	phrog_15303	NA	unknown function
UHGV-0357970_38	PHROG	phrog_1863	NA	unknown function
UHGV-0357970_38	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0357970_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0357970_39	PHROG	phrog_291	endolysin	lysis
UHGV-0357970_39	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0357970_39	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0357970_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0357970_39	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0357970_39	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0357970_40	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0357970_40	PHROG	phrog_7158	NA	unknown function
UHGV-0357970_40	UniRef90	UniRef90_A0A416ZS15	Metallophos domain-containing protein	NA
UHGV-0357970_40	eggNOG-mapper	657309.BXY_05130	Calcineurin-like phosphoesterase	NA
UHGV-0357970_40	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0357970_40	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0357970_40	Structural annotation	PF10651, PF12850, MF_00905, NF008359, NF038186, COG1409	NA	NA
UHGV-0357970_41	PHROG	phrog_18725	NA	unknown function
UHGV-0357970_41	UniRef90	UniRef90_UPI001D0EF571	Ig-like domain-containing protein	NA
UHGV-0357970_41	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0357970_41	COG	COG5492	NA	NA
UHGV-0357970_41	Structural annotation	PF15417, NF041539	NA	NA
UHGV-0357970_42	PHROG	phrog_13879	NA	unknown function
UHGV-0357970_42	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0357970_42	Pfam	PF19789	NA	DUF6273
UHGV-0357970_42	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0357970_43	PHROG	phrog_1194	NA	unknown function
UHGV-0357970_43	Pfam	PF20458	NA	DUF6711
UHGV-0357970_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0357970_44	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0357970_44	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0357970_44	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0357970_45	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0357970_46	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0357970_46	Pfam	PF16478	NA	DUF5055
UHGV-0357970_46	Structural annotation	PF16478	NA	NA
UHGV-0357970_47	PHROG	phrog_158	major tail protein	tail
UHGV-0357970_47	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0357970_47	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0357970_47	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0357970_48	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0357970_50	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0357970_50	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0357970_51	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0357970_51	Structural annotation	TIGR01560	NA	NA
UHGV-0357970_52	PHROG	phrog_29	major head protein	head and packaging
UHGV-0357970_52	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0357970_52	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0357970_52	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0357970_52	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA