UHGV-0358589

Genome information

vOTU vOTU-012050

Genome length 41,863 bps

CDS count 63

Completeness 97.81% (high-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0358589
vOTU ID	vOTU-012050
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR2855804_141_128729_round1256~3076673
BioSample	SAMD00164882
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.81% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.18
Jumbo phage	No

Genome content
Genome length	41,863 bps
GC content	37.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.10%
Average CDS length	608.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0358589_1	UniRef90	UniRef90_A0A417V8U5	BIG2 domain-containing protein	NA
UHGV-0358589_1	eggNOG-mapper	397290.C810_01424	NA	NA
UHGV-0358589_2	PHROG	phrog_87	metallo-protease	other
UHGV-0358589_2	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0358589_2	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0358589_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0358589_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0358589_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0358589_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0358589_3	UniRef90	UniRef90_A0A374AM30	XRE family transcriptional regulator	NA
UHGV-0358589_3	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0358589_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0358589_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0358589_3	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0358589_4	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0358589_4	UniRef90	UniRef90_L1Q6Z0	DNA-binding helix-turn-helix protein	NA
UHGV-0358589_4	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0358589_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0358589_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0358589_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0358589_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0358589_5	PHROG	phrog_9607	NA	unknown function
UHGV-0358589_5	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0358589_5	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0358589_6	PHROG	phrog_6058	NA	unknown function
UHGV-0358589_6	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0358589_6	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0358589_9	PHROG	phrog_3777	NA	unknown function
UHGV-0358589_9	Structural annotation	PF18441	NA	NA
UHGV-0358589_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0358589_10	UniRef90	UniRef90_B0P3C0	YqaJ viral recombinase family protein	NA
UHGV-0358589_10	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0358589_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0358589_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0358589_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0358589_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0358589_12	PHROG	phrog_674	NA	unknown function
UHGV-0358589_12	UniRef90	UniRef90_A0A415G8D2	NA	NA
UHGV-0358589_12	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0358589_12	Pfam	PF07083	NA	DUF1351
UHGV-0358589_12	Structural annotation	PF07083	NA	NA
UHGV-0358589_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0358589_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0358589_13	UniRef90	UniRef90_A0A173RED8	p33	NA
UHGV-0358589_13	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0358589_13	Pfam	PF03837	RecT family	RecT
UHGV-0358589_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0358589_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0358589_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0358589_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0358589_14	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0358589_15	PHROG	phrog_1029	NA	unknown function
UHGV-0358589_15	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0358589_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0358589_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0358589_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0358589_16	UniRef90	UniRef90_D4MWK7	Holliday junction resolvase	NA
UHGV-0358589_16	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0358589_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0358589_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0358589_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0358589_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0358589_17	UniRef90	UniRef90_A0A173REQ2	NA	NA
UHGV-0358589_17	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0358589_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0358589_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0358589_17	Structural annotation	PF14297	NA	NA
UHGV-0358589_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0358589_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0358589_18	UniRef90	UniRef90_A0A173RE69	Phage anti-repressor protein	NA
UHGV-0358589_18	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0358589_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0358589_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0358589_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0358589_18	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0358589_19	PHROG	phrog_17690	NA	unknown function
UHGV-0358589_19	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0358589_19	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0358589_25	PHROG	phrog_30258	NA	unknown function
UHGV-0358589_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0358589_26	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0358589_26	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0358589_26	Structural annotation	PF02996	NA	NA
UHGV-0358589_27	PHROG	phrog_872	NA	unknown function
UHGV-0358589_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0358589_27	dbAPIS	APIS052	NA	NA
UHGV-0358589_28	PHROG	phrog_918	NA	unknown function
UHGV-0358589_28	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0358589_28	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0358589_28	Pfam	PF19791	NA	DUF6275
UHGV-0358589_28	Structural annotation	PF19791	NA	NA
UHGV-0358589_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0358589_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0358589_29	UniRef90	UniRef90_A0A1Q2CAR6	Phage portal protein	NA
UHGV-0358589_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0358589_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0358589_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0358589_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0358589_29	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0358589_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0358589_30	PHROG	phrog_10250	NA	unknown function
UHGV-0358589_30	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0358589_30	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0358589_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0358589_30	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0358589_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0358589_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0358589_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0358589_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0358589_31	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0358589_31	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0358589_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0358589_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0358589_32	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0358589_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0358589_32	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0358589_32	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0358589_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0358589_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0358589_32	COG	COG2369	NA	NA
UHGV-0358589_32	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0358589_34	PHROG	phrog_3675	NA	unknown function
UHGV-0358589_34	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0358589_34	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0358589_34	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0358589_34	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0358589_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0358589_35	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0358589_35	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0358589_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0358589_35	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0358589_36	PHROG	phrog_247	major head protein	head and packaging
UHGV-0358589_36	UniRef90	UniRef90_A0A1Q2C3W4	Phage coat protein	NA
UHGV-0358589_36	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0358589_36	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0358589_36	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0358589_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0358589_37	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0358589_38	PHROG	phrog_3366	NA	unknown function
UHGV-0358589_38	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0358589_38	Pfam	PF20536	NA	DUF6751
UHGV-0358589_38	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0358589_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0358589_39	UniRef90	UniRef90_UPI001C012488	minor capsid protein	NA
UHGV-0358589_39	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0358589_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0358589_39	Structural annotation	PF11114	NA	NA
UHGV-0358589_40	PHROG	phrog_3266	tail completion	connector
UHGV-0358589_40	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0358589_40	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0358589_40	Structural annotation	PF12691	NA	NA
UHGV-0358589_41	PHROG	phrog_3099	NA	unknown function
UHGV-0358589_41	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0358589_41	eggNOG-mapper	1151292.QEW_4530	NA	NA
UHGV-0358589_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0358589_42	PHROG	phrog_4450	NA	unknown function
UHGV-0358589_42	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0358589_42	Pfam	PF20378	NA	DUF6673
UHGV-0358589_42	Structural annotation	PF20378	NA	NA
UHGV-0358589_43	PHROG	phrog_706	NA	unknown function
UHGV-0358589_43	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0358589_43	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0358589_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0358589_43	Structural annotation	PF06854	NA	NA
UHGV-0358589_45	UniRef90	UniRef90_UPI001570C906	helix-turn-helix transcriptional regulator	NA
UHGV-0358589_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0358589_46	eggNOG-mapper	537013.CLOSTMETH_00118	NA	NA
UHGV-0358589_47	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0358589_47	UniRef90	UniRef90_UPI00156E29B0	Rha family transcriptional regulator	NA
UHGV-0358589_47	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0358589_47	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0358589_47	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0358589_47	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0358589_47	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0358589_49	PHROG	phrog_19323	NA	unknown function
UHGV-0358589_49	UniRef90	UniRef90_UPI00191F19EB	SHOCT domain-containing protein	NA
UHGV-0358589_49	eggNOG-mapper	290402.Cbei_1346	NA	NA
UHGV-0358589_49	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0358589_50	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0358589_50	PHROG	phrog_19074	NA	unknown function
UHGV-0358589_50	UniRef90	UniRef90_A0A1Q6KF40	Phage tail tape measure protein	NA
UHGV-0358589_50	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0358589_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0358589_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0358589_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0358589_50	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0358589_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0358589_51	UniRef90	UniRef90_A0A1Q2C487	MtfA protein	NA
UHGV-0358589_51	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0358589_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0358589_51	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0358589_52	PHROG	phrog_3558	tail protein	tail
UHGV-0358589_52	UniRef90	UniRef90_A0A1Q2C3W1	Prophage_tail domain-containing protein	NA
UHGV-0358589_52	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0358589_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0358589_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0358589_52	COG	COG4926	Phage-related protein	NA
UHGV-0358589_52	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0358589_53	PHROG	phrog_18608	NA	unknown function
UHGV-0358589_53	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0358589_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0358589_54	eggNOG-mapper	657322.FPR_21920	NA	NA
UHGV-0358589_54	COG	COG5563	NA	NA
UHGV-0358589_57	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0358589_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0358589_57	UniRef90	UniRef90_A0A174QSU6	Tyrosine recombinase XerD	NA
UHGV-0358589_57	eggNOG-mapper	97139.C824_00246	Belongs to the 'phage' integrase family	NA
UHGV-0358589_57	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0358589_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0358589_57	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0358589_57	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0358589_61	PHROG	phrog_199	holin	lysis
UHGV-0358589_61	UniRef90	UniRef90_A0A1Q2CAY6	Holin	NA
UHGV-0358589_61	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0358589_61	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0358589_61	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0358589_61	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0358589_61	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0358589_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0358589_62	PHROG	phrog_435	endolysin	lysis
UHGV-0358589_62	UniRef90	UniRef90_UPI000985947E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0358589_62	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0358589_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0358589_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0358589_62	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA