UHGV-0359120

Genome information

Genome length 25,353 bps

CDS count 30

Completeness 56.11% (medium-quality)

geNomad score 0.9694

Prediction confidence Confident

Genome information
Genome ID	UHGV-0359120
vOTU ID	vOTU-030316
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR1915824_119_6737_round1256~3662919
BioSample	SAMN03398862
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9694
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.38
Jumbo phage	No

Genome content
Genome length	25,353 bps
GC content	28.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	93.20%
Average CDS length	790.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0359120_1	PHROG	phrog_28838	NA	unknown function
UHGV-0359120_1	eggNOG-mapper	931276.Cspa_c07580	nuclear chromosome segregation	NA
UHGV-0359120_1	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0359120_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0359120_3	PHROG	phrog_28838	NA	unknown function
UHGV-0359120_3	eggNOG-mapper	931276.Cspa_c07580	nuclear chromosome segregation	NA
UHGV-0359120_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0359120_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0359120_5	UniRef90	UniRef90_UPI001B38138C	phage tail protein	NA
UHGV-0359120_5	eggNOG-mapper	536233.CLO_1372	Phage minor structural protein	NA
UHGV-0359120_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0359120_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0359120_5	COG	COG4926	Phage-related protein	NA
UHGV-0359120_5	Structural annotation	PF14594, TIGR01665, NF041249, COG4926	NA	NA
UHGV-0359120_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0359120_6	UniRef90	UniRef90_UPI001B35E25E	phage tail family protein	NA
UHGV-0359120_6	eggNOG-mapper	536233.CLO_1371	phage tail	NA
UHGV-0359120_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0359120_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0359120_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0359120_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0359120_7	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0359120_7	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0359120_7	UniRef90	UniRef90_UPI001B3950AA	phage tail tape measure protein	NA
UHGV-0359120_7	eggNOG-mapper	632245.CLP_1658	Phage tail tape measure protein, TP901 family	NA
UHGV-0359120_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0359120_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0359120_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0359120_7	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0359120_8	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0359120_8	Structural annotation	PF11836	NA	NA
UHGV-0359120_9	PHROG	phrog_88	major tail protein	tail
UHGV-0359120_9	UniRef90	UniRef90_A0A6B4HZK5	Phage tail protein	NA
UHGV-0359120_9	eggNOG-mapper	632245.CLP_2689	phage major tail protein, phi13 family	NA
UHGV-0359120_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0359120_10	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0359120_10	Structural annotation	PF05657	NA	NA
UHGV-0359120_11	UniRef90	UniRef90_C4IGZ7	Phage protein, HK97 gp10 family	NA
UHGV-0359120_11	eggNOG-mapper	632245.CLP_2691	NA	NA
UHGV-0359120_11	Structural annotation	TIGR01725	NA	NA
UHGV-0359120_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0359120_12	UniRef90	UniRef90_UPI001B36AADE	phage head closure protein	NA
UHGV-0359120_12	eggNOG-mapper	536233.CLO_1365	Phage head-tail joining protein	NA
UHGV-0359120_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0359120_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0359120_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0359120_13	UniRef90	UniRef90_UPI001B37FEB1	head-tail connector protein	NA
UHGV-0359120_13	eggNOG-mapper	469617.FUAG_01840	Phage gp6-like head-tail connector protein	NA
UHGV-0359120_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0359120_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0359120_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0359120_14	UniRef90	UniRef90_UPI001B35DE25	HeH/LEM domain-containing protein	NA
UHGV-0359120_14	Pfam	PF12949	HeH/LEM domain	HeH
UHGV-0359120_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0359120_15	UniRef90	UniRef90_UPI001B38AB72	phage major capsid protein	NA
UHGV-0359120_15	eggNOG-mapper	1151292.QEW_0342	Phage capsid family	NA
UHGV-0359120_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0359120_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0359120_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0359120_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0359120_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0359120_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0359120_16	UniRef90	UniRef90_UPI001B3803C8	Clp protease ClpP	NA
UHGV-0359120_16	eggNOG-mapper	536233.CLO_1423	Belongs to the peptidase S14 family	NA
UHGV-0359120_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0359120_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0359120_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0359120_18	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0359120_18	UniRef90	UniRef90_UPI001B36D828	Rha family transcriptional regulator	NA
UHGV-0359120_18	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0359120_18	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0359120_18	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0359120_18	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0359120_18	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0359120_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0359120_21	UniRef90	UniRef90_UPI001B375374	phage portal protein	NA
UHGV-0359120_21	eggNOG-mapper	1151292.QEW_0340	Phage portal protein, HK97 family	NA
UHGV-0359120_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0359120_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0359120_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0359120_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0359120_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0359120_22	UniRef90	UniRef90_UPI001B384E4D	terminase large subunit	NA
UHGV-0359120_22	eggNOG-mapper	1382315.JPOI01000001_gene284	Phage Terminase	NA
UHGV-0359120_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0359120_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0359120_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0359120_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0359120_23	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0359120_23	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0359120_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0359120_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0359120_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0359120_24	UniRef90	UniRef90_UPI001B383A34	HNH endonuclease	NA
UHGV-0359120_24	eggNOG-mapper	1508644.SFBmNL_00838	HNH endonuclease	NA
UHGV-0359120_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0359120_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0359120_24	Structural annotation	PF05766	NA	NA
UHGV-0359120_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0359120_25	UniRef90	UniRef90_A0A7G9W8C4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0359120_25	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0359120_25	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0359120_25	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0359120_27	UniRef90	UniRef90_UPI000A1771EB	MazG-like family protein	NA
UHGV-0359120_27	eggNOG-mapper	1196322.A370_05727	NA	NA
UHGV-0359120_27	Structural annotation	PF06266	NA	NA
UHGV-0359120_28	PHROG	phrog_4740	NA	unknown function
UHGV-0359120_28	UniRef90	UniRef90_UPI001B383ABD	P-loop NTPase fold protein	NA
UHGV-0359120_28	eggNOG-mapper	1408422.JHYF01000028_gene3555	P-loop domain protein	NA
UHGV-0359120_28	PADLOC	ATPase_Blast	NA	NA
UHGV-0359120_28	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0359120_28	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0359120_28	Structural annotation	PF05621, MF_01508, TIGR03015, COG1474	NA	NA