UHGV-0359853

Genome information

vOTU vOTU-002076

Genome length 43,111 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9478

Prediction confidence Confident

Genome information
Genome ID	UHGV-0359853
vOTU ID	vOTU-002076
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_177914_round13~6591337
BioSample	SAMD00164864
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9478
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.71
Jumbo phage	No

Genome content
Genome length	43,111 bps
GC content	34.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	92.93%
Average CDS length	559.92 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0359853_1	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0359853_1	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0359853_1	UniRef90	UniRef90_A0A7T9D329	Protein RecA	NA
UHGV-0359853_1	eggNOG-mapper	1292033.MPUT9231_2570	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0359853_1	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0359853_1	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0359853_1	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0359853_2	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0359853_2	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0359853_2	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0359853_2	eggNOG-mapper	204536.SULAZ_0041	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0359853_2	Pfam	PF02811	PHP domain	PHP
UHGV-0359853_2	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0359853_2	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0359853_2	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0359853_2	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0359853_2	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0359853_2	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0359853_3	eggNOG-mapper	382464.ABSI01000011_gene2694	dUTPase	NA
UHGV-0359853_3	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0359853_3	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0359853_3	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0359853_4	Structural annotation	PF08804	NA	NA
UHGV-0359853_5	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0359853_5	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0359853_5	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0359853_5	eggNOG-mapper	90813.JQMT01000001_gene353	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0359853_5	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0359853_5	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0359853_5	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0359853_5	Structural annotation	PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0359853_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0359853_8	PHROG	phrog_670	endolysin	lysis
UHGV-0359853_8	UniRef90	UniRef90_A0A2V2ER13	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0359853_8	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0359853_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0359853_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0359853_9	PHROG	phrog_297	holin	lysis
UHGV-0359853_9	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0359853_9	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0359853_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0359853_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0359853_9	COG	COG5546	NA	NA
UHGV-0359853_9	Structural annotation	COG5546	NA	NA
UHGV-0359853_10	PHROG	phrog_23092	NA	unknown function
UHGV-0359853_10	eggNOG-mapper	1226322.HMPREF1545_00131	NA	NA
UHGV-0359853_11	eggNOG-mapper	1408437.JNJN01000040_gene192	NA	NA
UHGV-0359853_17	PHROG	phrog_11303	tail fiber protein	tail
UHGV-0359853_17	eggNOG-mapper	1123288.SOV_2c10820	Phage Tail Collar Domain	NA
UHGV-0359853_17	COG	COG4675	Phage tail collar domain	NA
UHGV-0359853_20	PHROG	phrog_587	structural protein	head and packaging
UHGV-0359853_20	UniRef90	UniRef90_A0A0U1KW84	Putative bacteriophage protein	NA
UHGV-0359853_20	eggNOG-mapper	1123288.SOV_2c10810	NA	NA
UHGV-0359853_20	Pfam	PF11041	NA	DUF2612
UHGV-0359853_20	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0359853_21	PHROG	phrog_6	baseplate protein	tail
UHGV-0359853_21	UniRef90	UniRef90_UPI00156BA425	baseplate J/gp47 family protein	NA
UHGV-0359853_21	eggNOG-mapper	1123288.SOV_2c10800	Baseplate J-like protein	NA
UHGV-0359853_21	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0359853_21	COG	COG3299	NA	NA
UHGV-0359853_21	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0359853_22	PHROG	phrog_120	baseplate protein	tail
UHGV-0359853_22	UniRef90	UniRef90_A0A0U1KW63	Putative bacteriophage protein	NA
UHGV-0359853_22	eggNOG-mapper	1211817.CCAT010000003_gene218	NA	NA
UHGV-0359853_22	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0359853_23	UniRef90	UniRef90_A0A1I7IEE4	Gp138_N domain-containing protein	NA
UHGV-0359853_23	eggNOG-mapper	1217705.F900_00725	Baseplate assembly protein	NA
UHGV-0359853_23	Pfam	PF18352	NA	Gp138_N
UHGV-0359853_23	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0359853_23	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0359853_24	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0359853_24	PHROG	phrog_20677	NA	unknown function
UHGV-0359853_24	UniRef90	UniRef90_A0A4Z0QZJ2	LYZ2 domain-containing protein	NA
UHGV-0359853_24	eggNOG-mapper	1123288.SOV_2c10770	NA	NA
UHGV-0359853_24	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0359853_24	Structural annotation	PF01551, PF05113, MF_00664, NF033848, NF040883, COG0739, COG3500	NA	NA
UHGV-0359853_25	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0359853_25	eggNOG-mapper	1196322.A370_02020	NA	NA
UHGV-0359853_26	PHROG	phrog_817	tail fiber protein	tail
UHGV-0359853_26	eggNOG-mapper	1196322.A370_02021	NA	NA
UHGV-0359853_26	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0359853_26	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0359853_27	PHROG	phrog_22539	NA	unknown function
UHGV-0359853_27	UniRef90	UniRef90_A0A412CGG1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0359853_27	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-0359853_28	UniRef90	UniRef90_UPI001C39E5BE	4-alpha-glucanotransferase	NA
UHGV-0359853_28	eggNOG-mapper	936573.HMPREF1147_1339	NA	NA
UHGV-0359853_29	eggNOG-mapper	1123288.SOV_2c10720	NA	NA
UHGV-0359853_29	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0359853_29	Structural annotation	PF21822	NA	NA
UHGV-0359853_30	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0359853_30	UniRef90	UniRef90_UPI0007737FC2	NA	NA
UHGV-0359853_30	eggNOG-mapper	1415774.U728_3741	NA	NA
UHGV-0359853_30	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0359853_30	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0359853_31	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0359853_31	UniRef90	UniRef90_UPI001C0FEA2F	NA	NA
UHGV-0359853_31	eggNOG-mapper	1211817.CCAT010000003_gene227	NA	NA
UHGV-0359853_31	Pfam	PF11863	NA	DUF3383
UHGV-0359853_31	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0359853_32	PHROG	phrog_1973	NA	unknown function
UHGV-0359853_32	eggNOG-mapper	1196322.A370_02026	NA	NA
UHGV-0359853_32	Structural annotation	PF06141	NA	NA
UHGV-0359853_33	eggNOG-mapper	1123288.SOV_2c10670	NA	NA
UHGV-0359853_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0359853_34	PHROG	phrog_222	tail protein	tail
UHGV-0359853_34	UniRef90	UniRef90_A0A0G0PG79	Bacteriophage protein	NA
UHGV-0359853_34	eggNOG-mapper	546271.Selsp_1328	NA	NA
UHGV-0359853_35	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0359853_35	UniRef90	UniRef90_A0A352NNK8	NA	NA
UHGV-0359853_35	eggNOG-mapper	1217705.F900_00710	NA	NA
UHGV-0359853_35	Pfam	PF13262	NA	DUF4054
UHGV-0359853_35	Structural annotation	PF13262	NA	NA
UHGV-0359853_37	PHROG	phrog_264	major head protein	head and packaging
UHGV-0359853_37	UniRef90	UniRef90_UPI0013D1CB98	NA	NA
UHGV-0359853_37	eggNOG-mapper	1415774.U728_3749	NA	NA
UHGV-0359853_37	Pfam	PF09950	NA	DUF2184
UHGV-0359853_37	COG	COG4834	NA	NA
UHGV-0359853_37	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0359853_38	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0359853_38	eggNOG-mapper	1211817.CCAT010000003_gene234	NA	NA
UHGV-0359853_38	Structural annotation	PF09956	NA	NA
UHGV-0359853_40	KOfam	K09960	NA	NA
UHGV-0359853_40	PHROG	phrog_16985	NA	unknown function
UHGV-0359853_40	UniRef90	UniRef90_UPI001C00F5B0	NA	NA
UHGV-0359853_40	eggNOG-mapper	1123288.SOV_2c10610	NA	NA
UHGV-0359853_40	Pfam	PF09979	NA	DUF2213
UHGV-0359853_40	COG	COG3566	NA	NA
UHGV-0359853_40	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0359853_44	PHROG	phrog_236	nucleotide kinase	other
UHGV-0359853_44	UniRef90	UniRef90_UPI001F2B3BB8	NA	NA
UHGV-0359853_44	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0359853_44	Pfam	PF11753	NA	DUF3310
UHGV-0359853_46	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0359853_46	UniRef90	UniRef90_A0A1C6GCR8	Phage N-6-adenine-methyltransferase	NA
UHGV-0359853_46	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0359853_46	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0359853_46	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0359853_46	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0359853_49	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0359853_49	UniRef90	UniRef90_A0A0C3MBK6	Phage_Mu_F domain-containing protein	NA
UHGV-0359853_49	eggNOG-mapper	1415774.U728_3754	Phage Mu protein F like protein	NA
UHGV-0359853_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0359853_49	COG	COG2369	NA	NA
UHGV-0359853_49	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0359853_50	PHROG	phrog_22529	NA	unknown function
UHGV-0359853_50	UniRef90	UniRef90_A0A1Q6KPP7	3D domain-containing protein	NA
UHGV-0359853_50	eggNOG-mapper	610130.Closa_0878	3D domain	NA
UHGV-0359853_50	Pfam	PF06725	3D domain	3D
UHGV-0359853_50	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0359853_50	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0359853_51	Structural annotation	PF06531, COG3212	NA	NA
UHGV-0359853_55	KOfam	K09961	NA	NA
UHGV-0359853_55	PHROG	phrog_146	portal protein	head and packaging
UHGV-0359853_55	UniRef90	UniRef90_G9XHI6	Phage-associated protein, HI1409 family	NA
UHGV-0359853_55	eggNOG-mapper	546271.Selsp_1337	NA	NA
UHGV-0359853_55	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0359853_55	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0359853_55	COG	COG3567	NA	NA
UHGV-0359853_55	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0359853_56	Structural annotation	PF00210, MF_01441, NF041388, COG0783	NA	NA
UHGV-0359853_57	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0359853_57	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0359853_57	UniRef90	UniRef90_UPI00156AC328	PBSX family phage terminase large subunit	NA
UHGV-0359853_57	eggNOG-mapper	1211817.CCAT010000003_gene241	phage terminase, large subunit, PBSX family	NA
UHGV-0359853_57	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0359853_57	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0359853_57	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0359853_57	COG	COG1783	Phage terminase large subunit	NA
UHGV-0359853_57	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0359853_61	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0359853_61	Structural annotation	PF13451, PF14493, PF09963, NF040785, COG2771, COG4896	NA	NA
UHGV-0359853_62	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0359853_62	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0359853_62	UniRef90	UniRef90_A0A1E5L8G9	Terminase	NA
UHGV-0359853_62	eggNOG-mapper	1567015.A0A0A7S1A8_9VIRU	Terminase small subunit	NA
UHGV-0359853_62	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0359853_62	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0359853_63	Structural annotation	PF14084	NA	NA
UHGV-0359853_64	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0359853_64	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0359853_64	UniRef90	UniRef90_R6Z2B0	Ribonuclease H	NA
UHGV-0359853_64	eggNOG-mapper	373903.Hore_08950	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0359853_64	Pfam	PF00075	RNase H	RNase_H
UHGV-0359853_64	COG	COG0328	Ribonuclease HI	NA
UHGV-0359853_64	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0359853_67	Structural annotation	PF18994	NA	NA
UHGV-0359853_68	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0359853_70	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0359853_71	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0359853_71	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0359853_71	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0359853_72	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0359853_72	UniRef90	UniRef90_A0A7X7M7I7	Protein RecA	NA
UHGV-0359853_72	eggNOG-mapper	1123500.ATUU01000001_gene371	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0359853_72	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0359853_72	COG	COG0468	RecA/RadA recombinase	NA