UHGV-0362830

Genome information

vOTU vOTU-012056

Genome length 25,722 bps

CDS count 29

Completeness 90.17% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0362830
vOTU ID	vOTU-012056
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	DRR127603_141_126992_round13~9174993
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.25
Jumbo phage	No

Genome content
Genome length	25,722 bps
GC content	33.25%
Genetic code	Blepharisma nuclear code (15)
CDS count	29
CDS density	93.35%
Average CDS length	832.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0362830_1	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0362830_1	UniRef90	UniRef90_A0A7M1RYP7	HNH endonuclease	NA
UHGV-0362830_1	eggNOG-mapper	1416012.V5UQG0_9CAUD	HNH endonuclease	NA
UHGV-0362830_1	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0362830_1	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0362830_1	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0362830_1	Structural annotation	PF07463, PF02796	NA	NA
UHGV-0362830_5	PHROG	phrog_17422	NA	unknown function
UHGV-0362830_5	eggNOG-mapper	908937.Prede_1342	NA	NA
UHGV-0362830_5	Structural annotation	PF15425, NF033675	NA	NA
UHGV-0362830_6	UniRef90	UniRef90_A0A0D9NGQ3	Secretion protein	NA
UHGV-0362830_6	eggNOG-mapper	1236517.BAKO01000013_gene1450	NA	NA
UHGV-0362830_6	Structural annotation	PF05113, TIGR03361, COG4379	NA	NA
UHGV-0362830_7	PHROG	phrog_21917	NA	unknown function
UHGV-0362830_7	eggNOG-mapper	1122931.AUAE01000036_gene1067	domain protein	NA
UHGV-0362830_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0362830_9	eggNOG-mapper	908937.Prede_1347	NA	NA
UHGV-0362830_10	PHROG	phrog_1407	major tail protein	tail
UHGV-0362830_10	UniRef90	UniRef90_UPI001F204862	phage tail protein	NA
UHGV-0362830_10	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-0362830_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0362830_10	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0362830_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0362830_11	UniRef90	UniRef90_UPI000C189777	NA	NA
UHGV-0362830_11	eggNOG-mapper	908937.Prede_1349	NA	NA
UHGV-0362830_11	Pfam	PF11367	NA	DUF3168
UHGV-0362830_11	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0362830_12	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0362830_12	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0362830_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0362830_13	UniRef90	UniRef90_F9D2Z9	Bacteriophage head-tail adaptor	NA
UHGV-0362830_13	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-0362830_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0362830_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0362830_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0362830_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0362830_14	UniRef90	UniRef90_A0A646HBR7	Phage gp6-like head-tail connector protein	NA
UHGV-0362830_14	eggNOG-mapper	908937.Prede_1352	Phage gp6-like head-tail connector protein	NA
UHGV-0362830_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0362830_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0362830_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0362830_15	PHROG	phrog_617	major head protein	head and packaging
UHGV-0362830_15	UniRef90	UniRef90_A0A3R6IXJ0	Phage major capsid protein	NA
UHGV-0362830_15	eggNOG-mapper	908937.Prede_1353	Phage capsid family	NA
UHGV-0362830_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0362830_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0362830_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0362830_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0362830_16	KOfam	K06904	NA	NA
UHGV-0362830_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0362830_16	UniRef90	UniRef90_A0A496C2C5	HK97 family phage prohead protease	NA
UHGV-0362830_16	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0362830_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0362830_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0362830_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0362830_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0362830_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0362830_19	UniRef90	UniRef90_F9D303	HK97 family phage portal protein	NA
UHGV-0362830_19	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-0362830_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0362830_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0362830_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0362830_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0362830_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0362830_20	UniRef90	UniRef90_D7IS84	Phage terminase large subunit	NA
UHGV-0362830_20	eggNOG-mapper	1122931.AUAE01000036_gene1072	Phage Terminase	NA
UHGV-0362830_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0362830_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0362830_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0362830_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0362830_21	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0362830_21	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0362830_21	UniRef90	UniRef90_A0A5Q2W5B6	Putative acetyltransferase	NA
UHGV-0362830_21	eggNOG-mapper	411464.DESPIG_01094	NA	NA
UHGV-0362830_21	Structural annotation	PF11039, MF_02018, NF000016, COG3818	NA	NA
UHGV-0362830_22	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0362830_22	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0362830_22	UniRef90	UniRef90_A0A1V5IXV2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0362830_22	eggNOG-mapper	1458861.A0A088C517_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0362830_22	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0362830_22	Structural annotation	TIGR00571, COG0338	NA	NA
UHGV-0362830_23	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0362830_23	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0362830_23	UniRef90	UniRef90_UPI001F2DC313	DNA adenine methylase	NA
UHGV-0362830_23	eggNOG-mapper	1416012.V5URG0_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0362830_23	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0362830_23	Structural annotation	TIGR00571, COG0338	NA	NA
UHGV-0362830_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0362830_24	UniRef90	UniRef90_D7IS85	Phage terminase, small subunit, P27 family	NA
UHGV-0362830_24	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-0362830_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0362830_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0362830_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0362830_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0362830_25	UniRef90	UniRef90_A0A646HAN7	Ribbon-helix-helix domain-containing protein	NA
UHGV-0362830_25	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0362830_25	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0362830_26	Structural annotation	NF007216	NA	NA
UHGV-0362830_27	UniRef90	UniRef90_A0A849YQS7	DEAD/DEAH box helicase family protein	NA
UHGV-0362830_27	eggNOG-mapper	1077285.AGDG01000016_gene518	NA	NA
UHGV-0362830_27	Structural annotation	PF02399, MF_00965, TIGR00614, COG1201	NA	NA
UHGV-0362830_28	eggNOG-mapper	1347393.HG726020_gene906	NA	NA
UHGV-0362830_28	Structural annotation	PF12187, MF_01490, NF040854, COG1591	NA	NA