UHGV-0363033

Genome information

Genome length 30,724 bps

CDS count 44

Completeness 98.19% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0363033
vOTU ID	vOTU-008144
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR11236207_141_278136_round1256~5110557
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.92
Jumbo phage	No

Genome content
Genome length	30,724 bps
GC content	47.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.03%
Average CDS length	637.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0363033_1	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0363033_1	PHROG	phrog_11420	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0363033_1	UniRef90	UniRef90_UPI00164AA34C	helix-turn-helix domain-containing protein	NA
UHGV-0363033_1	eggNOG-mapper	1203606.HMPREF1526_01866	Helix-turn-helix domain	NA
UHGV-0363033_1	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0363033_1	Structural annotation	PF04218	NA	NA
UHGV-0363033_3	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0363033_3	UniRef90	UniRef90_UPI00101BBD21	phosphoadenosine phosphosulfate reductase	NA
UHGV-0363033_3	eggNOG-mapper	476272.RUMHYD_03330	NA	NA
UHGV-0363033_3	PADLOC	SspD_00001	SspD	SSP
UHGV-0363033_3	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0363033_5	PHROG	phrog_9958	NA	unknown function
UHGV-0363033_5	UniRef90	UniRef90_R6GLI1	NA	NA
UHGV-0363033_5	eggNOG-mapper	246199.CUS_4486	NA	NA
UHGV-0363033_5	Pfam	PF19789	NA	DUF6273
UHGV-0363033_5	Structural annotation	PF19789	NA	NA
UHGV-0363033_7	PHROG	phrog_9958	NA	unknown function
UHGV-0363033_7	UniRef90	UniRef90_R6GLI1	NA	NA
UHGV-0363033_7	eggNOG-mapper	246199.CUS_4486	NA	NA
UHGV-0363033_7	Pfam	PF19789	NA	DUF6273
UHGV-0363033_7	Structural annotation	PF19789	NA	NA
UHGV-0363033_10	PHROG	phrog_22040	NA	unknown function
UHGV-0363033_10	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0363033_11	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0363033_11	PHROG	phrog_19349	NA	unknown function
UHGV-0363033_11	UniRef90	UniRef90_UPI00164BCB1C	transglycosylase SLT domain-containing protein	NA
UHGV-0363033_11	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0363033_11	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0363033_11	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0363033_11	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0363033_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0363033_12	eggNOG-mapper	1160721.RBI_I01590	NA	NA
UHGV-0363033_12	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0363033_14	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0363033_14	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0363033_14	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0363033_14	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0363033_14	Pfam	PF00692	dUTPase	dUTPase
UHGV-0363033_14	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0363033_14	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0363033_14	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0363033_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0363033_15	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0363033_15	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0363033_15	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0363033_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0363033_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0363033_16	UniRef90	UniRef90_UPI00164BCC03	HNH endonuclease	NA
UHGV-0363033_16	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0363033_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0363033_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0363033_17	Structural annotation	PF11305, MF_01360, NF010236	NA	NA
UHGV-0363033_18	PHROG	phrog_1066	NA	unknown function
UHGV-0363033_18	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-0363033_18	eggNOG-mapper	1160721.RBI_I01586	NA	NA
UHGV-0363033_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0363033_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0363033_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0363033_19	UniRef90	UniRef90_R6GIJ2	Terminase	NA
UHGV-0363033_19	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0363033_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0363033_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0363033_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0363033_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0363033_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0363033_20	UniRef90	UniRef90_UPI00164A28CE	phage portal protein	NA
UHGV-0363033_20	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0363033_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0363033_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0363033_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0363033_21	KOfam	K06904	NA	NA
UHGV-0363033_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0363033_21	UniRef90	UniRef90_UPI00164CA03D	HK97 family phage prohead protease	NA
UHGV-0363033_21	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0363033_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0363033_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0363033_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0363033_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0363033_22	UniRef90	UniRef90_UPI00164A2915	phage major capsid protein	NA
UHGV-0363033_22	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0363033_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0363033_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0363033_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0363033_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0363033_23	PHROG	phrog_5223	neck protein	connector
UHGV-0363033_23	UniRef90	UniRef90_UPI00164CC5D8	head-tail connector protein	NA
UHGV-0363033_23	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0363033_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0363033_23	Structural annotation	TIGR01560	NA	NA
UHGV-0363033_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0363033_24	UniRef90	UniRef90_UPI00164AE9A9	phage head closure protein	NA
UHGV-0363033_24	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-0363033_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0363033_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0363033_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0363033_25	PHROG	phrog_957	head protein	head and packaging
UHGV-0363033_25	Structural annotation	PF11367	NA	NA
UHGV-0363033_26	PHROG	phrog_885	major tail protein	tail
UHGV-0363033_26	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0363033_26	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0363033_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0363033_29	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0363033_29	UniRef90	UniRef90_R6GII4	Immunity-specific protein Beta241	NA
UHGV-0363033_29	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0363033_29	COG	COG5283	Phage-related tail protein	NA
UHGV-0363033_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0363033_30	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0363033_30	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0363033_30	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0363033_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0363033_30	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0363033_31	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0363033_31	UniRef90	UniRef90_UPI00164C5623	phage tail protein	NA
UHGV-0363033_31	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0363033_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0363033_31	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0363033_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0363033_31	COG	COG4926	Phage-related protein	NA
UHGV-0363033_31	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0363033_33	PHROG	phrog_19280	NA	unknown function
UHGV-0363033_33	UniRef90	UniRef90_UPI00164B6084	NA	NA
UHGV-0363033_33	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0363033_33	Pfam	PF19789	NA	DUF6273
UHGV-0363033_33	Structural annotation	PF19789, PF10651	NA	NA
UHGV-0363033_34	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0363033_34	UniRef90	UniRef90_A0A4S2HBV4	Four helix bundle protein	NA
UHGV-0363033_34	eggNOG-mapper	1235797.C816_02835	NA	NA
UHGV-0363033_34	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0363033_35	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0363033_35	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0363033_35	UniRef90	UniRef90_R6GLF4	Reverse transcriptase domain-containing protein	NA
UHGV-0363033_35	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0363033_35	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0363033_35	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0363033_35	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0363033_35	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0363033_36	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0363033_36	UniRef90	UniRef90_UPI00164B563B	phage tail assembly chaperone	NA
UHGV-0363033_36	eggNOG-mapper	269482.Bcep1808_1285	Phage tail assembly chaperone protein	NA
UHGV-0363033_36	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0363033_36	Structural annotation	PF16778	NA	NA
UHGV-0363033_38	PHROG	phrog_4105	NA	unknown function
UHGV-0363033_38	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0363033_39	PHROG	phrog_263	holin	lysis
UHGV-0363033_39	UniRef90	UniRef90_UPI00164AA2E4	phage holin	NA
UHGV-0363033_39	eggNOG-mapper	1158607.UAU_01779	SPP1 phage holin	NA
UHGV-0363033_39	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0363033_39	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0363033_39	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0363033_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0363033_40	PHROG	phrog_1794	amidase	lysis
UHGV-0363033_40	UniRef90	UniRef90_UPI00164C1B4B	SPOR domain-containing protein	NA
UHGV-0363033_40	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0363033_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0363033_40	Pfam	PF05036	SPOR domain	SPOR
UHGV-0363033_40	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0363033_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0363033_40	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0363033_41	Structural annotation	TIGR01725	NA	NA
UHGV-0363033_42	PHROG	phrog_37629	NA	unknown function
UHGV-0363033_42	UniRef90	UniRef90_UPI00164AD29E	HIRAN domain-containing protein	NA
UHGV-0363033_42	eggNOG-mapper	1160721.RBI_I01605	NA	NA
UHGV-0363033_42	AcrCatalog	cluster_27895	NA	NA
UHGV-0363033_42	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0363033_42	Structural annotation	PF08797	NA	NA
UHGV-0363033_43	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0363033_43	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0363033_43	UniRef90	UniRef90_UPI00164B94E5	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0363033_43	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0363033_43	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0363033_43	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0363033_43	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0363033_44	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0363033_44	PHROG	phrog_4646	transposase	integration and excision
UHGV-0363033_44	UniRef90	UniRef90_UPI00164A43CF	IS30 family transposase	NA
UHGV-0363033_44	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0363033_44	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0363033_44	Pfam	PF00665	Integrase core domain	rve
UHGV-0363033_44	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0363033_44	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0363033_44	Structural annotation	PF13358, PF13384, NF033563, COG2826	NA	NA