UHGV-0365472

Genome information

Genome length 42,265 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0365472
vOTU ID	vOTU-064493
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR5831615_141_35599_round347~2255401
BioSample	SAMN07357507
Country	Mozambique
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.66
Jumbo phage	No

Genome content
Genome length	42,265 bps
GC content	58.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.75%
Average CDS length	725.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0365472_1	eggNOG-mapper	411490.ANACAC_01307	Belongs to the 'phage' integrase family	NA
UHGV-0365472_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0365472_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0365472_2	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0365472_2	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0365472_5	PHROG	phrog_5783	NA	unknown function
UHGV-0365472_5	UniRef90	UniRef90_A0A7X2P6J8	NYN domain-containing protein	NA
UHGV-0365472_5	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-0365472_5	Pfam	PF01936	NYN domain	NYN
UHGV-0365472_5	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0365472_5	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0365472_6	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0365472_6	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0365472_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0365472_6	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0365472_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0365472_7	PHROG	phrog_1794	amidase	lysis
UHGV-0365472_7	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0365472_7	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0365472_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0365472_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0365472_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0365472_8	PHROG	phrog_13256	NA	unknown function
UHGV-0365472_8	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0365472_10	PHROG	phrog_937	hemolysin	other
UHGV-0365472_10	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0365472_11	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0365472_11	PHROG	phrog_7158	NA	unknown function
UHGV-0365472_11	UniRef90	UniRef90_A0A1E8F0N5	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0365472_11	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0365472_11	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0365472_11	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0365472_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0365472_12	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0365472_12	UniRef90	UniRef90_R6LGA5	SGNH_hydro domain-containing protein	NA
UHGV-0365472_12	eggNOG-mapper	1151292.QEW_0668	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0365472_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0365472_12	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0365472_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0365472_12	Structural annotation	PF16255, COG2755	NA	NA
UHGV-0365472_13	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0365472_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0365472_14	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0365472_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0365472_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0365472_15	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0365472_16	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0365472_17	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0365472_17	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0365472_19	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-0365472_20	PHROG	phrog_12105	NA	unknown function
UHGV-0365472_21	PHROG	phrog_15239	NA	unknown function
UHGV-0365472_22	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0365472_22	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0365472_22	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0365472_22	Pfam	PF13252	NA	DUF4043
UHGV-0365472_22	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0365472_22	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0365472_23	PHROG	phrog_13908	NA	unknown function
UHGV-0365472_23	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0365472_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-0365472_24	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0365472_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0365472_25	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0365472_25	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0365472_25	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0365472_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0365472_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0365472_26	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0365472_26	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0365472_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0365472_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0365472_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0365472_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0365472_27	Structural annotation	PF16677	NA	NA
UHGV-0365472_28	UniRef90	UniRef90_A0A3D2I6C5	Conjugal transfer protein	NA
UHGV-0365472_28	eggNOG-mapper	1235790.C805_01029	Cysteine-rich KTR	NA
UHGV-0365472_28	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0365472_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0365472_29	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0365472_29	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0365472_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0365472_33	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0365472_33	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0365472_33	Pfam	PF06356	NA	DUF1064
UHGV-0365472_33	Structural annotation	PF06356	NA	NA
UHGV-0365472_36	PHROG	phrog_38832	NA	unknown function
UHGV-0365472_36	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0365472_36	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0365472_36	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0365472_37	PHROG	phrog_3136	NA	unknown function
UHGV-0365472_37	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0365472_37	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0365472_37	Pfam	PF04266	ASCH domain	ASCH
UHGV-0365472_37	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0365472_37	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0365472_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0365472_39	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0365472_39	UniRef90	UniRef90_A0A1C5WFL3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0365472_39	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0365472_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0365472_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0365472_39	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0365472_42	Structural annotation	PF05082	NA	NA
UHGV-0365472_44	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0365472_44	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0365472_46	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0365472_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0365472_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0365472_50	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-0365472_50	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0365472_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0365472_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0365472_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0365472_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0365472_53	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0365472_54	KOfam	K14059	int; integrase	NA
UHGV-0365472_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0365472_54	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0365472_54	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0365472_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0365472_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0365472_54	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA