UHGV-0366128

Genome information

vOTU vOTU-020089

Genome length 33,927 bps

CDS count 49

Completeness 84.40% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0366128
vOTU ID	vOTU-020089
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_153176_round347~3878962
BioSample	SAMN08159974
Country	Italy
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.7
Jumbo phage	No

Genome content
Genome length	33,927 bps
GC content	40.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.73%
Average CDS length	645.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0366128_1	KOfam	K14059	int; integrase	NA
UHGV-0366128_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0366128_1	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0366128_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0366128_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0366128_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0366128_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0366128_2	KOfam	K07728	K07728; putative transcriptional regulator	NA
UHGV-0366128_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0366128_2	UniRef90	UniRef90_UPI00164BBB9D	XRE family transcriptional regulator	NA
UHGV-0366128_2	eggNOG-mapper	536233.CLO_1870	IrrE N-terminal-like domain	NA
UHGV-0366128_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0366128_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0366128_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0366128_2	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0366128_4	KOfam	K21463	tcaA; membrane-associated protein TcaA	NA
UHGV-0366128_4	UniRef90	UniRef90_A0A412DWX4	Tetratricopeptide repeat protein	NA
UHGV-0366128_5	UniRef90	UniRef90_UPI0007E1B082	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0366128_5	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-0366128_5	Structural annotation	PF06114	NA	NA
UHGV-0366128_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0366128_6	UniRef90	UniRef90_A0A412UNH6	XRE family transcriptional regulator	NA
UHGV-0366128_6	eggNOG-mapper	861450.HMPREF0080_02022	Helix-turn-helix XRE-family like proteins	NA
UHGV-0366128_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0366128_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0366128_7	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0366128_7	UniRef90	UniRef90_A0A412UNI5	XRE family transcriptional regulator	NA
UHGV-0366128_7	eggNOG-mapper	1274524.BSONL12_05988	Helix-turn-helix XRE-family like proteins	NA
UHGV-0366128_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0366128_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0366128_8	PHROG	phrog_3882	NA	unknown function
UHGV-0366128_9	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0366128_9	UniRef90	UniRef90_A0A413K8G3	NA	NA
UHGV-0366128_9	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0366128_9	Structural annotation	COG2250	NA	NA
UHGV-0366128_11	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0366128_11	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0366128_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0366128_11	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0366128_11	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0366128_11	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0366128_14	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0366128_15	PHROG	phrog_674	NA	unknown function
UHGV-0366128_15	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0366128_15	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0366128_15	Pfam	PF07083	NA	DUF1351
UHGV-0366128_15	Structural annotation	PF07083	NA	NA
UHGV-0366128_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0366128_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0366128_16	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0366128_16	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0366128_16	Pfam	PF03837	RecT family	RecT
UHGV-0366128_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0366128_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0366128_16	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0366128_17	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0366128_17	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0366128_17	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0366128_17	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0366128_17	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0366128_17	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0366128_17	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0366128_18	PHROG	phrog_398	NA	unknown function
UHGV-0366128_18	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0366128_18	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0366128_18	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0366128_18	Structural annotation	PF16784	NA	NA
UHGV-0366128_19	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0366128_19	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0366128_19	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0366128_19	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0366128_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0366128_19	Structural annotation	PF14297	NA	NA
UHGV-0366128_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0366128_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0366128_20	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0366128_20	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0366128_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0366128_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0366128_20	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0366128_21	PHROG	phrog_824	NA	unknown function
UHGV-0366128_21	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0366128_21	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0366128_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0366128_21	Structural annotation	PF08774	NA	NA
UHGV-0366128_26	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0366128_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0366128_26	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0366128_26	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0366128_26	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0366128_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0366128_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0366128_26	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0366128_28	PHROG	phrog_25754	NA	unknown function
UHGV-0366128_28	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0366128_28	Structural annotation	PF06372, NF041655	NA	NA
UHGV-0366128_29	Structural annotation	TIGR01636	NA	NA
UHGV-0366128_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0366128_30	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0366128_30	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0366128_30	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0366128_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0366128_30	Structural annotation	PF07141	NA	NA
UHGV-0366128_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0366128_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0366128_31	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0366128_31	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0366128_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0366128_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0366128_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0366128_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0366128_32	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0366128_32	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0366128_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0366128_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0366128_33	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0366128_33	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0366128_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0366128_33	COG	COG2369	NA	NA
UHGV-0366128_33	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0366128_35	PHROG	phrog_2616	NA	unknown function
UHGV-0366128_35	Structural annotation	PF01281	NA	NA
UHGV-0366128_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0366128_36	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0366128_36	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0366128_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0366128_36	Structural annotation	PF06810	NA	NA
UHGV-0366128_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0366128_37	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0366128_37	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0366128_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0366128_38	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0366128_38	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0366128_39	PHROG	phrog_3366	NA	unknown function
UHGV-0366128_39	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0366128_39	Pfam	PF20536	NA	DUF6751
UHGV-0366128_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0366128_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0366128_40	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0366128_40	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0366128_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0366128_40	Structural annotation	PF11114	NA	NA
UHGV-0366128_41	PHROG	phrog_3266	tail completion	connector
UHGV-0366128_41	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0366128_41	Structural annotation	PF20765	NA	NA
UHGV-0366128_42	PHROG	phrog_3099	NA	unknown function
UHGV-0366128_42	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0366128_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0366128_43	PHROG	phrog_11299	NA	unknown function
UHGV-0366128_43	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0366128_43	Structural annotation	PF10666	NA	NA
UHGV-0366128_44	PHROG	phrog_706	NA	unknown function
UHGV-0366128_44	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0366128_44	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0366128_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0366128_44	Structural annotation	PF06854	NA	NA
UHGV-0366128_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0366128_46	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0366128_46	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0366128_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0366128_46	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0366128_47	PHROG	phrog_1194	NA	unknown function
UHGV-0366128_47	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0366128_47	Pfam	PF20458	NA	DUF6711
UHGV-0366128_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0366128_48	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0366128_49	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0366128_49	Structural annotation	PF08931	NA	NA