UHGV-0366708

Genome information

Genome length 38,579 bps

CDS count 45

Completeness 94.72% (high-quality)

geNomad score 0.9575

Prediction confidence Confident

Genome information
Genome ID	UHGV-0366708
vOTU ID	vOTU-078739
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR634994_119_36717_round347~2033553
BioSample	SAMN02297032
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9575
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.73
Jumbo phage	No

Genome content
Genome length	38,579 bps
GC content	27.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	83.99%
Average CDS length	720.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0366708_1	UniRef90	UniRef90_UPI00038D53C7	dockerin type I domain-containing protein	NA
UHGV-0366708_1	eggNOG-mapper	1280689.AUJC01000005_gene633	domain protein	NA
UHGV-0366708_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0366708_5	eggNOG-mapper	1280689.AUJC01000005_gene629	NA	NA
UHGV-0366708_7	eggNOG-mapper	1280689.AUJC01000005_gene627	NA	NA
UHGV-0366708_8	KOfam	K07260	vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0366708_8	UniRef90	UniRef90_A0A1B8RT16	VanY domain-containing protein	NA
UHGV-0366708_8	eggNOG-mapper	1280689.AUJC01000005_gene626	PFAM peptidase M15B and M15C, D,D-carboxypeptidase VanY endolysin	NA
UHGV-0366708_8	Pfam	PF02557	D-alanyl-D-alanine carboxypeptidase	VanY
UHGV-0366708_8	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0366708_9	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0366708_9	UniRef90	UniRef90_UPI000D8A0ABE	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0366708_9	eggNOG-mapper	1499684.CCNP01000020_gene2264	NA	NA
UHGV-0366708_10	UniRef90	UniRef90_UPI000DCFCC11	iduronate sulfatase	NA
UHGV-0366708_10	eggNOG-mapper	457396.CSBG_01061	NA	NA
UHGV-0366708_11	PHROG	phrog_13256	NA	unknown function
UHGV-0366708_11	eggNOG-mapper	457396.CSBG_01062	NA	NA
UHGV-0366708_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0366708_12	UniRef90	UniRef90_UPI000D80BE47	phage tail protein	NA
UHGV-0366708_12	eggNOG-mapper	1499683.CCFF01000017_gene2158	Phage minor structural protein	NA
UHGV-0366708_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0366708_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0366708_12	COG	COG4926	Phage-related protein	NA
UHGV-0366708_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0366708_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0366708_14	UniRef90	UniRef90_A0A1C6CVI3	Phage-related protein	NA
UHGV-0366708_14	eggNOG-mapper	1499683.CCFF01000005_gene79	tail component	NA
UHGV-0366708_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0366708_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0366708_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0366708_15	UniRef90	UniRef90_A0A6A7KA30	Phage tail tape measure protein	NA
UHGV-0366708_15	eggNOG-mapper	573061.Clocel_0792	tail tape measure protein	NA
UHGV-0366708_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0366708_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0366708_17	PHROG	phrog_1021	NA	unknown function
UHGV-0366708_18	PHROG	phrog_885	major tail protein	tail
UHGV-0366708_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0366708_19	Structural annotation	PF20765	NA	NA
UHGV-0366708_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0366708_20	UniRef90	UniRef90_UPI001898B579	HK97 gp10 family phage protein	NA
UHGV-0366708_20	eggNOG-mapper	1408823.AXUS01000024_gene2720	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0366708_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0366708_20	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0366708_21	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0366708_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0366708_22	eggNOG-mapper	1415774.U728_1084	NA	NA
UHGV-0366708_23	PHROG	phrog_267	major head protein	head and packaging
UHGV-0366708_23	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0366708_23	eggNOG-mapper	411471.SUBVAR_06993	NA	NA
UHGV-0366708_23	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0366708_24	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0366708_24	UniRef90	UniRef90_UPI0018994135	NA	NA
UHGV-0366708_24	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-0366708_24	Pfam	PF14265	NA	DUF4355
UHGV-0366708_24	Structural annotation	PF14265	NA	NA
UHGV-0366708_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0366708_25	UniRef90	UniRef90_UPI000D8310C6	minor capsid protein	NA
UHGV-0366708_25	eggNOG-mapper	1499683.CCFF01000017_gene2145	Phage Mu protein F like protein	NA
UHGV-0366708_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0366708_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0366708_25	COG	COG2369	NA	NA
UHGV-0366708_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0366708_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0366708_26	UniRef90	UniRef90_UPI000D9BDE3D	phage portal protein	NA
UHGV-0366708_26	eggNOG-mapper	1415774.U728_1093	portal protein, SPP1 Gp6-like	NA
UHGV-0366708_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0366708_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0366708_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0366708_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0366708_27	UniRef90	UniRef90_UPI00189AA0BC	PBSX family phage terminase large subunit	NA
UHGV-0366708_27	eggNOG-mapper	1499683.CCFF01000005_gene64	Phage terminase, large subunit, PBSX family	NA
UHGV-0366708_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0366708_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0366708_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0366708_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0366708_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0366708_28	eggNOG-mapper	290402.Cbei_3611	NA	NA
UHGV-0366708_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0366708_29	UniRef90	UniRef90_A0A6J7WJW9	DNA-packaging protein gp3	NA
UHGV-0366708_29	eggNOG-mapper	536233.CLO_1560	DNA-packaging protein gp3	NA
UHGV-0366708_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0366708_35	UniRef90	UniRef90_UPI000C06FC2A	DEAD/DEAH box helicase family protein	NA
UHGV-0366708_35	eggNOG-mapper	545697.HMPREF0216_01757	Type III restriction enzyme, res subunit	NA
UHGV-0366708_36	PHROG	phrog_31036	NA	unknown function
UHGV-0366708_37	UniRef90	UniRef90_UPI001C10F62C	RNA dependent RNA polymerase	NA
UHGV-0366708_37	eggNOG-mapper	545697.HMPREF0216_01759	NA	NA
UHGV-0366708_37	Structural annotation	PF05183	NA	NA
UHGV-0366708_40	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0366708_40	UniRef90	UniRef90_UPI000D8E9FBA	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0366708_40	eggNOG-mapper	641107.CDLVIII_4637	NA	NA
UHGV-0366708_40	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0366708_43	UniRef90	UniRef90_UPI000D9F0E0B	LLM class flavin-dependent oxidoreductase	NA
UHGV-0366708_43	eggNOG-mapper	1499683.CCFF01000017_gene2117	NA	NA
UHGV-0366708_43	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0366708_44	KOfam	K07496	K07496; putative transposase	NA
UHGV-0366708_44	PHROG	phrog_506	transposase	integration and excision
UHGV-0366708_44	UniRef90	UniRef90_UPI0015F2DFE5	RNA-guided endonuclease TnpB family protein	NA
UHGV-0366708_44	eggNOG-mapper	1211817.CCAT010000010_gene2304	Putative transposase DNA-binding domain	NA
UHGV-0366708_44	PADLOC	Type_V_V_U3	Cas12	CRISPR-CAS
UHGV-0366708_44	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0366708_44	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0366708_44	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0366708_44	COG	COG0675	Transposase	NA
UHGV-0366708_44	Structural annotation	PF07282, PF01385, MF_00034, NF040570, COG0675	NA	NA
UHGV-0366708_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0366708_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0366708_45	UniRef90	UniRef90_UPI001A9C13F7	tyrosine-type recombinase/integrase	NA
UHGV-0366708_45	eggNOG-mapper	641107.CDLVIII_3178	Belongs to the 'phage' integrase family	NA
UHGV-0366708_45	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0366708_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0366708_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0366708_45	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA