UHGV-0366922

Genome information

Genome length 54,124 bps

CDS count 74

Completeness 100.00% (complete)

geNomad score 0.9699

Prediction confidence Confident

Genome information
Genome ID	UHGV-0366922
vOTU ID	vOTU-051154
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR9040445_141_131097_round8-12~2695369
BioSample	SAMN11391617
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9699
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.94
Jumbo phage	No

Genome content
Genome length	54,124 bps
GC content	59.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	89.23%
Average CDS length	654.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0366922_6	eggNOG-mapper	525268.HMPREF0308_2062	NA	NA
UHGV-0366922_10	PHROG	phrog_2131	NA	unknown function
UHGV-0366922_10	eggNOG-mapper	36809.MAB_1757	NA	NA
UHGV-0366922_11	KOfam	K00526	E1.17.4.1B, nrdB, nrdF; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]	NA
UHGV-0366922_11	PHROG	phrog_24856	ribonucleotide reductase class Ia beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0366922_11	UniRef90	UniRef90_Q4JX20	Ribonucleoside-diphosphate reductase subunit beta	NA
UHGV-0366922_11	eggNOG-mapper	306537.jk0480	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	NA
UHGV-0366922_11	Pfam	PF00268	Ribonucleotide reductase, small chain	Ribonuc_red_sm
UHGV-0366922_11	NCBIFam	TIGR04171.1	class 1b ribonucleoside-diphosphate reductase subunit beta	NA
UHGV-0366922_11	COG	COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	NA
UHGV-0366922_14	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0366922_14	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0366922_14	UniRef90	UniRef90_A0A1H3PP36	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0366922_14	eggNOG-mapper	979556.MTES_3473	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0366922_14	Pfam	PF00692	dUTPase	dUTPase
UHGV-0366922_14	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0366922_14	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0366922_14	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0366922_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0366922_17	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0366922_17	UniRef90	UniRef90_A0A2S8JAS6	HNH endonuclease	NA
UHGV-0366922_17	eggNOG-mapper	439809.A5YK77_9CAUD	HNH endonuclease	NA
UHGV-0366922_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0366922_27	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0366922_28	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0366922_28	UniRef90	UniRef90_A0A1I4BZV6	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0366922_28	eggNOG-mapper	504474.cu1411	Phage plasmid primase, P4 family domain protein	NA
UHGV-0366922_28	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0366922_28	Structural annotation	PF09250	NA	NA
UHGV-0366922_29	PHROG	phrog_226	minor tail protein	tail
UHGV-0366922_29	UniRef90	UniRef90_W5XXA9	Gp2	NA
UHGV-0366922_29	eggNOG-mapper	1463917.JODC01000036_gene5039	NA	NA
UHGV-0366922_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0366922_31	UniRef90	UniRef90_A0A133ZBD0	Putative phage terminase, large subunit	NA
UHGV-0366922_31	eggNOG-mapper	1224164.B843_00985	Terminase	NA
UHGV-0366922_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0366922_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0366922_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-0366922_32	UniRef90	UniRef90_A0A6B8TDR5	Phage portal protein	NA
UHGV-0366922_32	eggNOG-mapper	1224164.B843_00990	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0366922_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0366922_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0366922_33	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0366922_33	UniRef90	UniRef90_A0A385UHS8	Capsid maturation protease	NA
UHGV-0366922_33	eggNOG-mapper	1348662.CARG_02185	NA	NA
UHGV-0366922_34	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0366922_34	UniRef90	UniRef90_A0A385UEK1	Scaffolding protein	NA
UHGV-0366922_34	Structural annotation	PF14265	NA	NA
UHGV-0366922_35	PHROG	phrog_673	head scaffolding protein	head and packaging
UHGV-0366922_35	UniRef90	UniRef90_UPI001CB75ED0	NA	NA
UHGV-0366922_35	eggNOG-mapper	710421.Mycch_2208	NA	NA
UHGV-0366922_35	Pfam	PF09956	NA	DUF2190
UHGV-0366922_35	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0366922_36	PHROG	phrog_1650	major head protein	head and packaging
UHGV-0366922_36	UniRef90	UniRef90_A0A385UD91	Major capsid protein	NA
UHGV-0366922_36	eggNOG-mapper	1224164.B843_01015	NA	NA
UHGV-0366922_36	Structural annotation	PF05065, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0366922_37	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0366922_40	PHROG	phrog_123	tail terminator	connector
UHGV-0366922_41	PHROG	phrog_476	major tail protein	tail
UHGV-0366922_41	UniRef90	UniRef90_A0A2Z4Q8R5	Major tail protein	NA
UHGV-0366922_41	eggNOG-mapper	1160137.KB907309_gene6296	NA	NA
UHGV-0366922_41	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0366922_43	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-0366922_43	eggNOG-mapper	1160137.KB907309_gene6299	NA	NA
UHGV-0366922_44	PHROG	phrog_5448	tail length tape measure protein	tail
UHGV-0366922_44	eggNOG-mapper	384848.A7IYB6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0366922_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0366922_45	PHROG	phrog_106	minor tail protein	tail
UHGV-0366922_45	UniRef90	UniRef90_W5Y527	Minor tail protein Gp27	NA
UHGV-0366922_45	eggNOG-mapper	1224164.B843_01060	NA	NA
UHGV-0366922_46	PHROG	phrog_110	minor tail protein	tail
UHGV-0366922_46	UniRef90	UniRef90_W5XY35	Minor tail protein Gp28	NA
UHGV-0366922_46	eggNOG-mapper	1224164.B843_01065	NA	NA
UHGV-0366922_46	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0366922_47	PHROG	phrog_352	minor tail protein	tail
UHGV-0366922_47	UniRef90	UniRef90_A0A0G3H0H5	NA	NA
UHGV-0366922_47	eggNOG-mapper	1224164.B843_01070	NA	NA
UHGV-0366922_47	Pfam	PF10910	NA	DUF2744
UHGV-0366922_48	PHROG	phrog_12076	NA	unknown function
UHGV-0366922_48	eggNOG-mapper	1224164.B843_01075	NA	NA
UHGV-0366922_49	PHROG	phrog_32265	NA	unknown function
UHGV-0366922_49	eggNOG-mapper	504474.cu1430	Hep Hag repeat protein	NA
UHGV-0366922_49	COG	COG5295	Autotransporter adhesin	NA
UHGV-0366922_50	eggNOG-mapper	504474.cu1431	NA	NA
UHGV-0366922_51	PHROG	phrog_18593	NA	unknown function
UHGV-0366922_51	UniRef90	UniRef90_A0A1G4VGV2	Carbohydrate binding domain protein	NA
UHGV-0366922_51	eggNOG-mapper	525268.HMPREF0308_2115	NA	NA
UHGV-0366922_51	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0366922_52	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0366922_52	PHROG	phrog_1519	endolysin	lysis
UHGV-0366922_52	UniRef90	UniRef90_A0A5D4FNK5	Basic endochitinase	NA
UHGV-0366922_52	eggNOG-mapper	384848.A7IYC3_9CAUD	chitin catabolic process	NA
UHGV-0366922_52	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0366922_53	PHROG	phrog_28311	NA	unknown function
UHGV-0366922_54	PHROG	phrog_1298	minor tail protein	tail
UHGV-0366922_54	UniRef90	UniRef90_A0A7T1KS45	Membrane protein	NA
UHGV-0366922_54	eggNOG-mapper	548476.cauri_1908	NA	NA
UHGV-0366922_55	PHROG	phrog_726	NA	unknown function
UHGV-0366922_56	KOfam	K14059	int; integrase	NA
UHGV-0366922_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0366922_56	UniRef90	UniRef90_A0A6I7YMR9	Recombinase	NA
UHGV-0366922_56	eggNOG-mapper	1451189.CFAL_09875	Belongs to the 'phage' integrase family	NA
UHGV-0366922_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0366922_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0366922_56	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0366922_57	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0366922_57	eggNOG-mapper	1121363.KB902191_gene234	NA	NA
UHGV-0366922_59	UniRef90	UniRef90_A0A373A587	DNA-binding protein	NA
UHGV-0366922_59	eggNOG-mapper	1348663.KCH_26430	recombinase activity	NA
UHGV-0366922_59	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0366922_59	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0366922_60	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0366922_60	UniRef90	UniRef90_A0A8F3SMY7	YqaJ viral recombinase family protein	NA
UHGV-0366922_60	eggNOG-mapper	945712.CULC22_01964	YqaJ-like viral recombinase domain	NA
UHGV-0366922_60	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0366922_60	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0366922_60	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0366922_62	PHROG	phrog_4171	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0366922_62	UniRef90	UniRef90_A0A4Y6EPX5	RecT-like ssDNA binding protein	NA
UHGV-0366922_62	eggNOG-mapper	1125779.HMPREF1219_00142	NA	NA
UHGV-0366922_62	Pfam	PF03837	RecT family	RecT
UHGV-0366922_63	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0366922_63	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0366922_63	UniRef90	UniRef90_A0A841FQX6	Single-stranded DNA-binding protein	NA
UHGV-0366922_63	eggNOG-mapper	326424.FRAAL6852	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0366922_63	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0366922_63	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0366922_63	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0366922_63	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0366922_63	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0366922_67	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0366922_67	UniRef90	UniRef90_U7LG43	Mrr_cat domain-containing protein	NA
UHGV-0366922_67	eggNOG-mapper	1203567.HMPREF1286_01332	NA	NA
UHGV-0366922_67	Structural annotation	COG1591	NA	NA
UHGV-0366922_69	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0366922_69	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0366922_69	UniRef90	UniRef90_A0A418Q9C2	Replicative DNA helicase	NA
UHGV-0366922_69	eggNOG-mapper	1451189.CFAL_11605	Participates in initiation and elongation during chromosome replication	NA
UHGV-0366922_69	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0366922_69	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0366922_69	COG	COG0305	Replicative DNA helicase	NA
UHGV-0366922_69	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0366922_71	PHROG	phrog_236	nucleotide kinase	other
UHGV-0366922_71	UniRef90	UniRef90_UPI001C0EA713	NA	NA
UHGV-0366922_71	eggNOG-mapper	1437608.BBIA_2170	NA	NA
UHGV-0366922_71	Pfam	PF11753	NA	DUF3310
UHGV-0366922_72	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0366922_72	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0366922_72	UniRef90	UniRef90_A0A376GW43	FAD-dependent thymidylate synthase	NA
UHGV-0366922_72	eggNOG-mapper	525268.HMPREF0308_2049	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0366922_72	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0366922_72	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0366922_72	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0366922_72	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0366922_72	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0366922_73	eggNOG-mapper	525268.HMPREF0308_2042	NA	NA