UHGV-0367572

Genome information

vOTU vOTU-012065

Genome length 40,024 bps

CDS count 65

Completeness 98.23% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0367572
vOTU ID	vOTU-012065
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	ERR2641619_141_17985_round8-12~799191
BioSample	SAMEA4731463
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.09
Jumbo phage	No

Genome content
Genome length	40,024 bps
GC content	50.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.47%
Average CDS length	575.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0367572_3	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0367572_3	PHROG	phrog_7698	endolysin	lysis
UHGV-0367572_3	UniRef90	UniRef90_A0A1C5V282	Exo-glucosaminidase lytG	NA
UHGV-0367572_3	eggNOG-mapper	1410624.JNKK01000045_gene544	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0367572_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0367572_3	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0367572_3	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0367572_3	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0367572_4	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-0367572_5	PHROG	phrog_1129	holin	lysis
UHGV-0367572_5	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0367572_5	eggNOG-mapper	476272.RUMHYD_03138	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0367572_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0367572_5	Structural annotation	PF16079	NA	NA
UHGV-0367572_6	PHROG	phrog_3754	NA	unknown function
UHGV-0367572_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0367572_7	PHROG	phrog_21718	NA	unknown function
UHGV-0367572_7	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0367572_8	PHROG	phrog_22984	NA	unknown function
UHGV-0367572_9	PHROG	phrog_16490	NA	unknown function
UHGV-0367572_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0367572_10	PHROG	phrog_20016	NA	unknown function
UHGV-0367572_10	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0367572_10	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0367572_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0367572_11	Structural annotation	PF12510	NA	NA
UHGV-0367572_12	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0367572_14	KOfam	K14059	int; integrase	NA
UHGV-0367572_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0367572_14	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0367572_14	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0367572_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0367572_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0367572_14	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0367572_15	PHROG	phrog_10934	NA	unknown function
UHGV-0367572_15	eggNOG-mapper	883114.HMPREF9709_01227	NA	NA
UHGV-0367572_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0367572_19	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0367572_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0367572_20	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0367572_20	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0367572_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0367572_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0367572_20	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0367572_21	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0367572_21	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-0367572_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0367572_21	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0367572_21	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0367572_22	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0367572_22	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0367572_24	PHROG	phrog_5070	NA	unknown function
UHGV-0367572_24	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0367572_24	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0367572_24	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0367572_24	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0367572_24	Structural annotation	NF040481	NA	NA
UHGV-0367572_27	PHROG	phrog_674	NA	unknown function
UHGV-0367572_27	UniRef90	UniRef90_A0A7X9JQ21	NA	NA
UHGV-0367572_27	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0367572_27	Pfam	PF07083	NA	DUF1351
UHGV-0367572_27	Structural annotation	PF07083	NA	NA
UHGV-0367572_28	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0367572_28	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0367572_28	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0367572_28	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0367572_28	Pfam	PF03837	RecT family	RecT
UHGV-0367572_28	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0367572_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0367572_28	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0367572_29	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0367572_29	UniRef90	UniRef90_UPI0012DD1D82	MBL fold metallo-hydrolase	NA
UHGV-0367572_29	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0367572_29	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0367572_29	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0367572_29	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0367572_30	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0367572_30	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0367572_30	Pfam	PF19808	NA	DUF6291
UHGV-0367572_30	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0367572_30	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0367572_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0367572_30	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0367572_31	PHROG	phrog_9804	NA	unknown function
UHGV-0367572_31	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0367572_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0367572_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0367572_32	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0367572_32	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0367572_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0367572_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0367572_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0367572_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0367572_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0367572_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0367572_33	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0367572_33	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0367572_33	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0367572_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0367572_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0367572_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0367572_36	PHROG	phrog_9958	NA	unknown function
UHGV-0367572_36	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0367572_36	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0367572_36	Structural annotation	PF19789	NA	NA
UHGV-0367572_37	PHROG	phrog_16244	NA	unknown function
UHGV-0367572_38	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0367572_38	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0367572_38	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0367572_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0367572_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0367572_38	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0367572_40	UniRef90	UniRef90_UPI001C00E342	NA	NA
UHGV-0367572_40	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0367572_43	PHROG	phrog_11237	NA	unknown function
UHGV-0367572_43	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0367572_43	Structural annotation	NF009167	NA	NA
UHGV-0367572_44	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0367572_44	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0367572_44	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0367572_44	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0367572_44	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0367572_44	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0367572_45	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0367572_45	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0367572_45	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0367572_45	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0367572_45	Structural annotation	PF16677	NA	NA
UHGV-0367572_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0367572_46	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0367572_46	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0367572_46	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0367572_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0367572_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0367572_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0367572_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0367572_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0367572_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0367572_47	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0367572_47	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0367572_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0367572_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0367572_49	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0367572_49	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0367572_49	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0367572_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0367572_49	COG	COG2369	NA	NA
UHGV-0367572_49	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0367572_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0367572_51	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0367572_51	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0367572_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0367572_51	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0367572_51	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0367572_52	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0367572_52	Structural annotation	PF06810	NA	NA
UHGV-0367572_53	PHROG	phrog_544	major head protein	head and packaging
UHGV-0367572_53	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0367572_53	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0367572_53	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0367572_53	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0367572_55	PHROG	phrog_17977	NA	unknown function
UHGV-0367572_55	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0367572_55	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0367572_56	Structural annotation	PF11367	NA	NA
UHGV-0367572_57	PHROG	phrog_885	major tail protein	tail
UHGV-0367572_57	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0367572_57	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0367572_57	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0367572_58	PHROG	phrog_18646	NA	unknown function
UHGV-0367572_60	PHROG	phrog_20920	NA	unknown function
UHGV-0367572_60	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0367572_60	Structural annotation	PF16674	NA	NA
UHGV-0367572_61	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0367572_61	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-0367572_61	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0367572_61	COG	COG1511	NA	NA
UHGV-0367572_61	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0367572_62	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0367572_62	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0367572_62	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0367572_62	COG	COG4722	Phage-related protein YomH	NA
UHGV-0367572_62	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0367572_63	PHROG	phrog_538	minor tail protein	tail
UHGV-0367572_63	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0367572_63	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0367572_63	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0367572_63	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0367572_64	PHROG	phrog_9534	head protein	head and packaging
UHGV-0367572_64	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0367572_64	Structural annotation	PF18463, PF20747	NA	NA