UHGV-0368984

Genome information

Genome length 51,304 bps

CDS count 70

Completeness 93.75% (high-quality)

geNomad score 0.9627

Prediction confidence Confident

Genome information
Genome ID	UHGV-0368984
vOTU ID	vOTU-068541
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_21084_round13~5293386
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9627
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.32
Jumbo phage	No

Genome content
Genome length	51,304 bps
GC content	31.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	86.14%
Average CDS length	633.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0368984_4	UniRef90	UniRef90_UPI001CCAA82E	helix-turn-helix transcriptional regulator	NA
UHGV-0368984_4	eggNOG-mapper	218284.CCDN010000002_gene2022	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0368984_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0368984_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0368984_5	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0368984_5	UniRef90	UniRef90_UPI000BED016D	AAA family ATPase	NA
UHGV-0368984_5	eggNOG-mapper	485916.Dtox_3893	dephospho-CoA kinase activity	NA
UHGV-0368984_5	Pfam	PF21448	Deoxynucleotide monophosphate kinase	DNMK
UHGV-0368984_5	COG	COG0237	Dephospho-CoA kinase	NA
UHGV-0368984_5	Structural annotation	PF21448, MF_01111, TIGR01223, COG0237	NA	NA
UHGV-0368984_6	KOfam	K09787	NA	NA
UHGV-0368984_6	PHROG	phrog_3512	sigma factor	transcription regulation
UHGV-0368984_6	UniRef90	UniRef90_A0A1G5JJ91	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0368984_6	eggNOG-mapper	485916.Dtox_1886	RNA polymerase, sigma 28 subunit, FliA WhiG subfamily	NA
UHGV-0368984_6	Pfam	PF04297	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
UHGV-0368984_6	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0368984_7	PHROG	phrog_13088	NA	unknown function
UHGV-0368984_8	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0368984_8	PHROG	phrog_14642	endolysin	lysis
UHGV-0368984_8	UniRef90	UniRef90_A0A3T0KUB6	Hydrolase_2 domain-containing protein	NA
UHGV-0368984_8	eggNOG-mapper	1284352.AOIG01000010_gene1957	Cell wall hydrolyses involved in spore germination	NA
UHGV-0368984_8	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0368984_8	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0368984_10	KOfam	K07313	pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]	NA
UHGV-0368984_10	PHROG	phrog_246	NinI-like serine-threonine phosphatase	other
UHGV-0368984_10	UniRef90	UniRef90_UPI001054B9C8	serine/threonine protein phosphatase	NA
UHGV-0368984_10	eggNOG-mapper	545243.BAEV01000079_gene2988	Calcineurin-like phosphoesterase	NA
UHGV-0368984_10	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0368984_10	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0368984_10	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0368984_13	UniRef90	UniRef90_A0A0U9HBP7	Short C-terminal domain-containing protein	NA
UHGV-0368984_13	eggNOG-mapper	536232.CLM_1664	NA	NA
UHGV-0368984_15	PHROG	phrog_6361	NA	unknown function
UHGV-0368984_15	UniRef90	UniRef90_UPI000419FCDD	SprT-like domain-containing protein	NA
UHGV-0368984_15	eggNOG-mapper	1121091.AUMP01000047_gene1329	SprT-like family	NA
UHGV-0368984_15	Pfam	PF10263	SprT-like family	SprT-like
UHGV-0368984_21	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0368984_21	UniRef90	UniRef90_UPI001CCA147B	phBC6A51 family helix-turn-helix protein	NA
UHGV-0368984_21	eggNOG-mapper	485916.Dtox_3917	Helix-turn-helix of insertion element transposase	NA
UHGV-0368984_21	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0368984_21	Structural annotation	PF13022	NA	NA
UHGV-0368984_22	Structural annotation	PF10694	NA	NA
UHGV-0368984_23	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0368984_23	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0368984_23	UniRef90	UniRef90_UPI001CCE3FAB	recombinase family protein	NA
UHGV-0368984_23	eggNOG-mapper	406327.Mevan_0088	Resolvase helix-turn-helix domain protein	NA
UHGV-0368984_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0368984_23	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0368984_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0368984_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0368984_24	UniRef90	UniRef90_UPI001CCCF999	phage terminase large subunit	NA
UHGV-0368984_24	eggNOG-mapper	1499685.CCFJ01000055_gene1938	TIGRFAM Phage	NA
UHGV-0368984_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0368984_24	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0368984_24	COG	COG5362	Phage terminase large subunit	NA
UHGV-0368984_24	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0368984_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0368984_25	UniRef90	UniRef90_UPI001CCA7392	phage portal protein	NA
UHGV-0368984_25	eggNOG-mapper	370438.PTH_2192	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0368984_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0368984_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0368984_26	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0368984_26	UniRef90	UniRef90_UPI001CCE1C1E	phage minor capsid protein	NA
UHGV-0368984_26	eggNOG-mapper	720555.BATR1942_09860	Phage minor capsid protein 2	NA
UHGV-0368984_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0368984_27	eggNOG-mapper	240302.BN982_04108	NA	NA
UHGV-0368984_28	PHROG	phrog_212	major head protein	head and packaging
UHGV-0368984_28	UniRef90	UniRef90_UPI001CCD26A6	phage major capsid protein	NA
UHGV-0368984_28	eggNOG-mapper	370438.PTH_2189	NA	NA
UHGV-0368984_28	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0368984_28	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0368984_29	eggNOG-mapper	720555.BATR1942_09840	NA	NA
UHGV-0368984_31	UniRef90	UniRef90_UPI000BF52725	HK97 gp10 family phage protein	NA
UHGV-0368984_33	PHROG	phrog_1407	major tail protein	tail
UHGV-0368984_33	UniRef90	UniRef90_UPI001CCAF29D	phage tail protein	NA
UHGV-0368984_33	eggNOG-mapper	720555.BATR1942_09820	Phage tail tube protein	NA
UHGV-0368984_33	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0368984_33	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0368984_33	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0368984_33	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0368984_34	PHROG	phrog_2115	tail protein	tail
UHGV-0368984_34	UniRef90	UniRef90_UPI001F0A5270	gene transfer agent family protein	NA
UHGV-0368984_34	eggNOG-mapper	935948.KE386495_gene1327	NA	NA
UHGV-0368984_34	Structural annotation	PF19591	NA	NA
UHGV-0368984_36	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-0368984_36	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0368984_36	eggNOG-mapper	1280689.AUJC01000007_gene3308	tape measure	NA
UHGV-0368984_36	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0368984_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0368984_36	Structural annotation	PF20155, TIGR01760, COG5281	NA	NA
UHGV-0368984_37	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0368984_37	UniRef90	UniRef90_UPI001CCD112E	phage tail family protein	NA
UHGV-0368984_37	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0368984_37	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0368984_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0368984_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0368984_38	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0368984_38	eggNOG-mapper	1329516.JPST01000005_gene1273	Prophage endopeptidase tail	NA
UHGV-0368984_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0368984_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0368984_38	COG	COG4926	Phage-related protein	NA
UHGV-0368984_39	PHROG	phrog_18444	NA	unknown function
UHGV-0368984_39	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0368984_40	eggNOG-mapper	1499683.CCFF01000017_gene2916	NA	NA
UHGV-0368984_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0368984_41	PHROG	phrog_435	endolysin	lysis
UHGV-0368984_41	UniRef90	UniRef90_UPI001EE5EF6D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0368984_41	eggNOG-mapper	1280689.AUJC01000007_gene3302	Ami_3	NA
UHGV-0368984_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0368984_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0368984_41	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0368984_44	PHROG	phrog_12720	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0368984_44	UniRef90	UniRef90_UPI001CCDCB3F	helix-turn-helix domain-containing protein	NA
UHGV-0368984_44	eggNOG-mapper	720555.BATR1942_09775	Helix-turn-helix domain	NA
UHGV-0368984_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0368984_45	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0368984_45	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0368984_45	UniRef90	UniRef90_A0A6B4XKY2	ParM/StbA family protein	NA
UHGV-0368984_45	eggNOG-mapper	1443122.Z958_p0069	Heat shock 70 kDa protein	NA
UHGV-0368984_45	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0368984_45	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-0368984_45	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0368984_46	eggNOG-mapper	742742.HMPREF9452_00402	NA	NA
UHGV-0368984_48	UniRef90	UniRef90_UPI001CCDD611	TaqI family restriction endonuclease	NA
UHGV-0368984_48	eggNOG-mapper	720555.BATR1942_09880	NA	NA
UHGV-0368984_49	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0368984_49	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0368984_49	UniRef90	UniRef90_UPI001CCEB133	DnaA/Hda family protein	NA
UHGV-0368984_49	eggNOG-mapper	720555.BATR1942_09770	DNA-dependent DNA replication	NA
UHGV-0368984_49	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0368984_49	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0368984_49	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0368984_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0368984_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0368984_50	UniRef90	UniRef90_UPI001CCFA813	AAA family ATPase	NA
UHGV-0368984_50	eggNOG-mapper	720555.BATR1942_09765	AAA domain	NA
UHGV-0368984_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0368984_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0368984_50	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0368984_53	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0368984_53	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0368984_53	UniRef90	UniRef90_UPI001CCA0547	toprim domain-containing protein	NA
UHGV-0368984_53	eggNOG-mapper	720555.BATR1942_09755	Toprim-like	NA
UHGV-0368984_53	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0368984_53	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0368984_53	Structural annotation	PF13155, PF01807, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0368984_55	PHROG	phrog_6883	NA	unknown function
UHGV-0368984_55	eggNOG-mapper	370438.PTH_2160	NA	NA
UHGV-0368984_55	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0368984_57	KOfam	K07464	cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]	NA
UHGV-0368984_57	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0368984_57	UniRef90	UniRef90_UPI001CCFBB2F	PD-(D/E)XK nuclease family protein	NA
UHGV-0368984_57	eggNOG-mapper	485916.Dtox_1875	NA	NA
UHGV-0368984_57	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0368984_57	Structural annotation	PF01930, TIGR00372, COG2887	NA	NA
UHGV-0368984_59	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-0368984_59	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0368984_59	UniRef90	UniRef90_UPI000D18733E	crossover junction endodeoxyribonuclease RuvC-like	NA
UHGV-0368984_59	eggNOG-mapper	240302.BN982_04139	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0368984_59	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-0368984_59	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0368984_59	Structural annotation	PF02075, MF_00034, TIGR00228, COG0817	NA	NA
UHGV-0368984_61	UniRef90	UniRef90_UPI0004D8DC63	NA	NA
UHGV-0368984_61	Structural annotation	PF11195	NA	NA
UHGV-0368984_62	PHROG	phrog_1048	NA	unknown function
UHGV-0368984_62	UniRef90	UniRef90_UPI001D101445	NA	NA
UHGV-0368984_62	eggNOG-mapper	1134413.ANNK01000120_gene2028	NA	NA
UHGV-0368984_62	Pfam	PF11195	NA	DUF2829
UHGV-0368984_62	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0368984_62	Structural annotation	PF11195	NA	NA
UHGV-0368984_64	KOfam	K00857	tdk, TK; thymidine kinase [EC:2.7.1.21]	NA
UHGV-0368984_64	PHROG	phrog_592	thymidine kinase	other
UHGV-0368984_64	UniRef90	UniRef90_UPI000D186150	thymidine kinase	NA
UHGV-0368984_64	eggNOG-mapper	720555.BATR1942_09710	thymidine kinase	NA
UHGV-0368984_64	Pfam	PF00265	Thymidine kinase	TK
UHGV-0368984_64	COG	COG1435	Thymidine kinase	NA
UHGV-0368984_64	Structural annotation	PF00265, MF_00124, NF003296, COG1435	NA	NA
UHGV-0368984_67	KOfam	K15519	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	NA
UHGV-0368984_67	PHROG	phrog_761	thymidylate kinase	other
UHGV-0368984_67	UniRef90	UniRef90_UPI000D1821DE	deoxyguanosine kinase-like	NA
UHGV-0368984_67	eggNOG-mapper	536233.CLO_1949	Deoxynucleoside kinase	NA
UHGV-0368984_67	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-0368984_67	COG	COG1428	Deoxyadenosine/deoxycytidine kinase	NA
UHGV-0368984_69	KOfam	K08728	E2.4.2.6; nucleoside deoxyribosyltransferase [EC:2.4.2.6]	NA
UHGV-0368984_69	PHROG	phrog_7995	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0368984_69	UniRef90	UniRef90_UPI00083492B0	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0368984_69	eggNOG-mapper	1391647.AVSV01000020_gene2183	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0368984_69	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
UHGV-0368984_69	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0368984_69	Structural annotation	PF05014, MF_03036, TIGR03646, COG3613	NA	NA