UHGV-0370812

Genome information

Genome length 59,625 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0370812
vOTU ID	vOTU-051226
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR7495903_141_64789_round1256~2498315
BioSample	SAMN09605436
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.1
Jumbo phage	No

Genome content
Genome length	59,625 bps
GC content	43.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.67%
Average CDS length	828.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0370812_2	UniRef90	UniRef90_A0A3Q9JL55	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0370812_3	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0370812_3	UniRef90	UniRef90_A0A239JVK1	Homeodomain-like domain-containing protein	NA
UHGV-0370812_3	eggNOG-mapper	1129192.A0A0E3D9B7_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0370812_3	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0370812_4	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0370812_4	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0370812_4	UniRef90	UniRef90_A0A3Q9JJK9	Putative DNA repair protein	NA
UHGV-0370812_4	eggNOG-mapper	378806.STAUR_2648	NA	NA
UHGV-0370812_4	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0370812_4	COG	COG2887	RecB family exonuclease	NA
UHGV-0370812_5	KOfam	K24972	purZ; 2-amino-2'-deoxyadenylo-succinate synthase [EC:6.3.4.25]	NA
UHGV-0370812_5	PHROG	phrog_1211	adenylosuccinate synthetase	moron, auxiliary metabolic gene and host takeover
UHGV-0370812_5	UniRef90	UniRef90_A0A3S9XAC5	Adenylosuccinate synthetase	NA
UHGV-0370812_5	eggNOG-mapper	1192034.CAP_2227	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP	NA
UHGV-0370812_5	Pfam	PF00709	Adenylosuccinate synthetase	Adenylsucc_synt
UHGV-0370812_5	COG	COG0104	Adenylosuccinate synthase	NA
UHGV-0370812_5	HAMAP	MF_00011	Adenylosuccinate synthetase [purA]	NA
UHGV-0370812_5	Structural annotation	PF00709, MF_00011, TIGR00184, COG0104	NA	NA
UHGV-0370812_6	Pfam	PF20600	Exodeoxyribonuclease X-like C-terminal	ExoX-like_C
UHGV-0370812_8	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0370812_8	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0370812_8	UniRef90	UniRef90_A0A3S9X9Z1	Recombinase A	NA
UHGV-0370812_8	eggNOG-mapper	411473.RUMCAL_03299	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0370812_8	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0370812_8	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0370812_8	Structural annotation	PF00154, PF21096, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0370812_11	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0370812_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0370812_11	UniRef90	UniRef90_A0A3Q9JGV3	Helicase	NA
UHGV-0370812_11	eggNOG-mapper	1084719.G3MAE1_9CAUD	Type III restriction enzyme, res subunit	NA
UHGV-0370812_11	PADLOC	PbeA_00005	PbeA	PBE
UHGV-0370812_11	Pfam	PF21241	DNA helicase UvsW, N-terminal	UvsW_N
UHGV-0370812_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0370812_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0370812_11	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0370812_14	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0370812_14	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0370812_14	UniRef90	UniRef90_A0A3Q9JGV2	DNA helicase	NA
UHGV-0370812_14	eggNOG-mapper	574087.Acear_0692	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0370812_14	PADLOC	drt-cluster192	DRT	DRT
UHGV-0370812_14	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0370812_14	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0370812_14	Pfam	PF10410	DnaB-helicase binding domain of primase	DnaB_bind
UHGV-0370812_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0370812_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0370812_14	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0370812_14	Structural annotation	PF03796, PF01807, PF19898, PF05203, MF_04154, TIGR01391, NF004967, NF038162, COG0358, COG0305, COG1372	NA	NA
UHGV-0370812_15	KOfam	K00939	adk, AK; adenylate kinase [EC:2.7.4.3]	NA
UHGV-0370812_15	UniRef90	UniRef90_D3PN21	Adenylate kinase	NA
UHGV-0370812_15	eggNOG-mapper	1122221.JHVI01000001_gene1981	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism	NA
UHGV-0370812_15	Pfam	PF13207	AAA domain	AAA_17
UHGV-0370812_15	COG	COG0563	Adenylate kinase or related kinase	NA
UHGV-0370812_16	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0370812_16	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0370812_16	UniRef90	UniRef90_I1TJZ7	Putative anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0370812_16	eggNOG-mapper	1147137.I1TJZ7_9CAUD	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0370812_16	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0370812_16	NCBIFam	TIGR02487.1	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0370812_16	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0370812_17	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0370812_17	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0370812_17	UniRef90	UniRef90_A0A0A0HW96	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-0370812_17	eggNOG-mapper	1555202.A0A097EY85_9CAUD	4 iron, 4 sulfur cluster binding	NA
UHGV-0370812_17	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0370812_17	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0370812_17	Structural annotation	PF13353, MF_02059, TIGR02491, COG0602	NA	NA
UHGV-0370812_18	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0370812_18	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0370812_18	UniRef90	UniRef90_A0A3Q9JJL6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0370812_18	eggNOG-mapper	172861.R4N0M9_9ADEN	dUTPase	NA
UHGV-0370812_18	Pfam	PF00692	dUTPase	dUTPase
UHGV-0370812_18	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0370812_19	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0370812_19	UniRef90	UniRef90_A0A3Q9JMA0	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0370812_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0370812_21	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0370812_21	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0370812_21	UniRef90	UniRef90_A0A3D0NUZ3	DNA polymerase III subunit alpha (Fragment)	NA
UHGV-0370812_21	eggNOG-mapper	521010.BbiDN127_0582	DNA-directed DNA polymerase	NA
UHGV-0370812_21	Pfam	PF02811	PHP domain	PHP
UHGV-0370812_21	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0370812_22	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0370812_22	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0370812_22	UniRef90	UniRef90_UPI000830ECF3	DNA polymerase III subunit alpha	NA
UHGV-0370812_22	eggNOG-mapper	370438.PTH_2220	DNA polymerase III alpha subunit	NA
UHGV-0370812_22	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0370812_22	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0370812_22	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0370812_22	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0370812_22	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0370812_25	PHROG	phrog_6721	NA	unknown function
UHGV-0370812_25	eggNOG-mapper	1151292.QEW_0706	NA	NA
UHGV-0370812_41	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0370812_41	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0370812_41	UniRef90	UniRef90_A0A173S4I1	Bifunctional protein FolD	NA
UHGV-0370812_41	eggNOG-mapper	702450.CUW_1771	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0370812_41	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-0370812_41	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0370812_41	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0370812_41	HAMAP	MF_01576	Bifunctional protein FolD [folD]	NA
UHGV-0370812_41	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-0370812_43	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-0370812_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0370812_44	PHROG	phrog_10250	NA	unknown function
UHGV-0370812_44	UniRef90	UniRef90_UPI0013D5C470	PBSX family phage terminase large subunit	NA
UHGV-0370812_44	eggNOG-mapper	1415774.U728_837	phage terminase, large subunit, PBSX family	NA
UHGV-0370812_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0370812_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0370812_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0370812_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0370812_45	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0370812_45	UniRef90	UniRef90_UPI0005C7B1D7	NA	NA
UHGV-0370812_45	eggNOG-mapper	999411.HMPREF1092_00897	NA	NA
UHGV-0370812_45	Pfam	PF14359	NA	DUF4406
UHGV-0370812_45	Structural annotation	PF14359, MF_03036, NF010074, COG3613	NA	NA
UHGV-0370812_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0370812_46	UniRef90	UniRef90_A0A1V6EUU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0370812_46	eggNOG-mapper	285514.JNWO01000004_gene6428	NA	NA
UHGV-0370812_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0370812_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0370812_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0370812_47	eggNOG-mapper	219305.MCAG_03839	Phage minor capsid protein 2	NA
UHGV-0370812_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0370812_48	KOfam	K07584	NA	NA
UHGV-0370812_48	PHROG	phrog_4478	peptidase	other
UHGV-0370812_48	UniRef90	UniRef90_A0A0X8D3I9	Ribosomal protein	NA
UHGV-0370812_48	eggNOG-mapper	358681.BBR47_35400	Cysteine protease Prp	NA
UHGV-0370812_48	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0370812_48	COG	COG2868	NA	NA
UHGV-0370812_49	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0370812_50	PHROG	phrog_267	major head protein	head and packaging
UHGV-0370812_50	UniRef90	UniRef90_A0A3A9JXK2	P22 coat protein-protein 5 domain protein	NA
UHGV-0370812_50	eggNOG-mapper	749413.E5DV53_9VIRU	P22 coat protein - gene protein 5	NA
UHGV-0370812_50	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0370812_54	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0370812_54	UniRef90	UniRef90_UPI001CCE35D0	minor capsid protein	NA
UHGV-0370812_54	eggNOG-mapper	66875.JODY01000010_gene1622	NA	NA
UHGV-0370812_54	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0370812_55	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0370812_55	eggNOG-mapper	285514.JNWO01000004_gene6420	NA	NA
UHGV-0370812_55	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0370812_56	PHROG	phrog_3884	major tail protein	tail
UHGV-0370812_56	eggNOG-mapper	285514.JNWO01000004_gene6419	NA	NA
UHGV-0370812_57	PHROG	phrog_6959	tail assembly chaperone	tail
UHGV-0370812_58	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0370812_58	UniRef90	UniRef90_UPI0015E88EDA	tape measure protein	NA
UHGV-0370812_58	eggNOG-mapper	370438.PTH_2178	Apolipoprotein A1/A4/E domain	NA
UHGV-0370812_58	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0370812_58	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0370812_58	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0370812_59	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0370812_59	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0370812_59	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0370812_59	COG	COG4722	Phage-related protein YomH	NA
UHGV-0370812_60	PHROG	phrog_19445	tail tip protein Tal	head and packaging
UHGV-0370812_60	eggNOG-mapper	279010.BL00967	Phage minor structural protein	NA
UHGV-0370812_60	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0370812_60	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0370812_60	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0370812_60	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0370812_62	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0370812_62	eggNOG-mapper	536233.CLO_0899	NA	NA
UHGV-0370812_62	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0370812_64	PHROG	phrog_297	holin	lysis
UHGV-0370812_64	UniRef90	UniRef90_A0A1S8TVT6	Bacteriophage holin	NA
UHGV-0370812_64	eggNOG-mapper	1069533.Sinf_0801	COG5546 Small integral membrane protein	NA
UHGV-0370812_64	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0370812_64	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0370812_64	COG	COG5546	NA	NA
UHGV-0370812_65	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0370812_65	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0370812_65	UniRef90	UniRef90_A0A7X9B8B5	M23 family metallopeptidase	NA
UHGV-0370812_65	eggNOG-mapper	1507.HMPREF0262_01194	Peptidase family M23	NA
UHGV-0370812_65	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0370812_65	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0370812_65	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0370812_67	Pfam	PF18780	Homing endonuclease associated repeat	HNH_repeat