UHGV-0370987

Genome information

Genome length 31,774 bps

CDS count 51

Completeness 90.31% (high-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0370987
vOTU ID	vOTU-080180
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_908457_round14~2213593
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.94
Jumbo phage	No

Genome content
Genome length	31,774 bps
GC content	38.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.75%
Average CDS length	589.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0370987_1	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0370987_1	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0370987_1	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0370987_1	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0370987_1	Pfam	PF03837	RecT family	RecT
UHGV-0370987_1	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0370987_1	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0370987_1	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0370987_2	PHROG	phrog_674	NA	unknown function
UHGV-0370987_2	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0370987_2	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0370987_2	Pfam	PF07083	NA	DUF1351
UHGV-0370987_2	Structural annotation	PF07083	NA	NA
UHGV-0370987_10	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0370987_11	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0370987_11	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0370987_11	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0370987_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0370987_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0370987_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0370987_15	PHROG	phrog_2232	NA	unknown function
UHGV-0370987_15	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0370987_15	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0370987_15	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0370987_17	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0370987_18	Structural annotation	COG1862	NA	NA
UHGV-0370987_23	PHROG	phrog_8470	NA	unknown function
UHGV-0370987_23	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0370987_23	eggNOG-mapper	1235790.C805_00306	PcfJ-like protein	NA
UHGV-0370987_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0370987_23	Structural annotation	PF14284	NA	NA
UHGV-0370987_24	PHROG	phrog_15609	NA	unknown function
UHGV-0370987_24	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0370987_24	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0370987_24	Pfam	PF11300	NA	DUF3102
UHGV-0370987_24	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0370987_25	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0370987_25	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0370987_25	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0370987_25	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0370987_25	PADLOC	MTase_I_00010	Type I methyltransferase	RM
UHGV-0370987_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0370987_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0370987_25	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0370987_27	PHROG	phrog_24518	NA	unknown function
UHGV-0370987_27	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0370987_28	PHROG	phrog_824	NA	unknown function
UHGV-0370987_28	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0370987_28	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0370987_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0370987_28	Structural annotation	PF08774	NA	NA
UHGV-0370987_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0370987_30	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0370987_30	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0370987_31	Structural annotation	TIGR01636	NA	NA
UHGV-0370987_32	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0370987_32	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0370987_32	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0370987_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0370987_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0370987_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0370987_33	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0370987_33	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0370987_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0370987_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0370987_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0370987_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0370987_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0370987_34	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0370987_34	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0370987_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0370987_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0370987_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0370987_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0370987_35	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0370987_35	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0370987_35	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0370987_35	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0370987_35	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0370987_35	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0370987_35	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0370987_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0370987_36	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0370987_36	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0370987_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0370987_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0370987_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0370987_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0370987_37	PHROG	phrog_749	NA	unknown function
UHGV-0370987_37	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0370987_37	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0370987_38	PHROG	phrog_19734	NA	unknown function
UHGV-0370987_38	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0370987_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0370987_39	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0370987_39	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0370987_40	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0370987_40	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0370987_40	Structural annotation	TIGR01725	NA	NA
UHGV-0370987_41	PHROG	phrog_88	major tail protein	tail
UHGV-0370987_41	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0370987_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0370987_41	COG	COG5492	NA	NA
UHGV-0370987_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0370987_42	Structural annotation	PF11836	NA	NA
UHGV-0370987_44	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0370987_44	PHROG	phrog_5218	NA	unknown function
UHGV-0370987_44	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0370987_44	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0370987_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0370987_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0370987_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0370987_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0370987_45	UniRef90	UniRef90_UPI00073F69EF	phage tail family protein	NA
UHGV-0370987_45	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0370987_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0370987_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0370987_46	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0370987_46	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0370987_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0370987_46	COG	COG1511	NA	NA
UHGV-0370987_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0370987_47	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0370987_47	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0370987_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0370987_49	PHROG	phrog_833	endolysin	lysis
UHGV-0370987_49	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0370987_49	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0370987_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0370987_49	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0370987_49	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0370987_50	PHROG	phrog_1863	NA	unknown function
UHGV-0370987_50	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0370987_50	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0370987_51	PHROG	phrog_443	holin	lysis
UHGV-0370987_51	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-0370987_51	eggNOG-mapper	610130.Closa_4157	Putative lactococcus lactis phage r1t holin	NA
UHGV-0370987_51	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0370987_51	Structural annotation	PF16945	NA	NA