UHGV-0375964

Genome information

Genome length 16,051 bps

CDS count 20

Completeness 72.80% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0375964
vOTU ID	vOTU-015176
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_67800_round8-12~2923786
BioSample	SAMEA2467038
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.34
Jumbo phage	No

Genome content
Genome length	16,051 bps
GC content	39.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	93.77%
Average CDS length	758.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0375964_1	PHROG	phrog_2038	upper collar connector	connector
UHGV-0375964_1	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0375964_1	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0375964_1	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0375964_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0375964_2	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0375964_2	eggNOG-mapper	1162304.I3PV20_9CAUD	NA	NA
UHGV-0375964_3	COG	COG5434	Polygalacturonase	NA
UHGV-0375964_3	Structural annotation	PF12708, TIGR03808, COG5434	NA	NA
UHGV-0375964_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0375964_7	UniRef90	UniRef90_A0A843FWE9	Phage DNA encapsidation protein	NA
UHGV-0375964_7	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0375964_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0375964_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0375964_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0375964_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0375964_9	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0375964_9	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0375964_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0375964_9	Structural annotation	PF03175, MF_04055	NA	NA
UHGV-0375964_10	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0375964_10	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0375964_10	UniRef90	UniRef90_A0A843HI09	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0375964_10	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0375964_10	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0375964_10	Structural annotation	PF03175, MF_01899, TIGR01388	NA	NA
UHGV-0375964_11	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-0375964_11	Structural annotation	PF05435	NA	NA
UHGV-0375964_12	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0375964_12	UniRef90	UniRef90_B6RT34	SsDNA binding protein	NA
UHGV-0375964_12	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0375964_12	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0375964_12	Structural annotation	PF17427	NA	NA
UHGV-0375964_13	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0375964_13	Structural annotation	PF17548	NA	NA
UHGV-0375964_14	PHROG	phrog_4898	holin	lysis
UHGV-0375964_15	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0375964_15	PHROG	phrog_435	endolysin	lysis
UHGV-0375964_15	UniRef90	UniRef90_A0A6N3CDT7	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0375964_15	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0375964_15	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0375964_15	Pfam	PF05036	SPOR domain	SPOR
UHGV-0375964_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0375964_15	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0375964_16	PHROG	phrog_11037	NA	unknown function
UHGV-0375964_16	UniRef90	UniRef90_A0A843GY68	Phage_lysozyme2 domain-containing protein	NA
UHGV-0375964_16	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0375964_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0375964_16	COG	COG3942	Surface antigen	NA
UHGV-0375964_16	Structural annotation	PF18013	NA	NA
UHGV-0375964_18	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0375964_18	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0375964_18	eggNOG-mapper	1309583.M4W8D1_9CAUD	viral capsid	NA
UHGV-0375964_18	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0375964_19	PHROG	phrog_2248	tail protein	tail
UHGV-0375964_19	UniRef90	UniRef90_A0A843FW77	Caud_tail_N domain-containing protein	NA
UHGV-0375964_19	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0375964_19	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0375964_19	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0375964_19	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0375964_20	PHROG	phrog_2038	upper collar connector	connector
UHGV-0375964_20	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0375964_20	Pfam	PF05352	Phage Connector (GP10)	Phage_connector