UHGV-0376773

Genome information

vOTU vOTU-012097

Genome length 39,958 bps

CDS count 52

Completeness 99.76% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0376773
vOTU ID	vOTU-012097
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k141_199_round8-12~474655
BioSample	SAMEA3488657
Country	Malawi
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.15
Jumbo phage	No

Genome content
Genome length	39,958 bps
GC content	44.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.56%
Average CDS length	721.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0376773_1	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0376773_1	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0376773_1	UniRef90	UniRef90_A0A380N7T6	Bacteriophage tail assembly protein	NA
UHGV-0376773_1	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0376773_1	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0376773_1	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0376773_1	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0376773_1	Structural annotation	PF20454, PF05876, MF_04144, NF000711, COG5525	NA	NA
UHGV-0376773_2	PHROG	phrog_20307	NA	unknown function
UHGV-0376773_2	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0376773_2	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0376773_3	PHROG	phrog_21	portal protein	head and packaging
UHGV-0376773_3	UniRef90	UniRef90_A0A380N598	Phage portal protein, lambda family	NA
UHGV-0376773_3	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0376773_3	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0376773_3	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0376773_3	COG	COG5511	Phage capsid protein	NA
UHGV-0376773_3	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0376773_4	KOfam	K06904	NA	NA
UHGV-0376773_4	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0376773_4	UniRef90	UniRef90_A0A380N679	Mu-like prophage major head subunit gpT	NA
UHGV-0376773_4	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0376773_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0376773_4	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0376773_4	COG	COG3087	Cell division protein FtsN	NA
UHGV-0376773_4	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0376773_5	PHROG	phrog_122	head decoration	head and packaging
UHGV-0376773_5	UniRef90	UniRef90_UPI0018EB5284	NA	NA
UHGV-0376773_5	eggNOG-mapper	1005058.UMN179_02397	NA	NA
UHGV-0376773_5	Pfam	PF09956	NA	DUF2190
UHGV-0376773_5	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0376773_5	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0376773_6	PHROG	phrog_27032	NA	unknown function
UHGV-0376773_6	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0376773_7	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0376773_7	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0376773_7	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0376773_8	PHROG	phrog_17431	NA	unknown function
UHGV-0376773_8	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0376773_8	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0376773_9	PHROG	phrog_290	minor tail protein	tail
UHGV-0376773_9	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0376773_9	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0376773_9	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0376773_9	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0376773_10	PHROG	phrog_27248	NA	unknown function
UHGV-0376773_11	PHROG	phrog_22443	NA	unknown function
UHGV-0376773_11	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-0376773_11	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0376773_11	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0376773_11	COG	COG4913	NA	NA
UHGV-0376773_11	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0376773_12	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0376773_12	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0376773_13	PHROG	phrog_18	minor tail protein	tail
UHGV-0376773_13	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0376773_13	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0376773_13	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0376773_13	COG	COG4672	Phage tail protein	NA
UHGV-0376773_13	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0376773_14	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0376773_14	PHROG	phrog_329	minor tail protein	tail
UHGV-0376773_14	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0376773_14	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0376773_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0376773_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0376773_14	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0376773_15	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0376773_15	UniRef90	UniRef90_A0A380N5W7	Phage-related protein, tail component	NA
UHGV-0376773_15	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0376773_15	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0376773_15	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0376773_15	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0376773_15	COG	COG1511	NA	NA
UHGV-0376773_15	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0376773_16	Structural annotation	PF21519	NA	NA
UHGV-0376773_18	PHROG	phrog_1084	NA	unknown function
UHGV-0376773_18	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0376773_18	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0376773_19	PHROG	phrog_22483	NA	unknown function
UHGV-0376773_19	UniRef90	UniRef90_X8H8Q8	Collagen triple helix repeat protein	NA
UHGV-0376773_19	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0376773_19	Structural annotation	PF17936, COG2372	NA	NA
UHGV-0376773_20	PHROG	phrog_23091	NA	unknown function
UHGV-0376773_21	PHROG	phrog_27828	NA	unknown function
UHGV-0376773_21	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0376773_21	eggNOG-mapper	1128111.HMPREF0870_01750	NA	NA
UHGV-0376773_22	PHROG	phrog_5867	endolysin	lysis
UHGV-0376773_22	UniRef90	UniRef90_D6KLI5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0376773_22	eggNOG-mapper	1128111.HMPREF0870_01749	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0376773_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0376773_22	Structural annotation	MF_04111	NA	NA
UHGV-0376773_23	PHROG	phrog_18860	NA	unknown function
UHGV-0376773_24	UniRef90	UniRef90_F5KZP8	Conserved domain protein	NA
UHGV-0376773_25	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0376773_25	UniRef90	UniRef90_F5KZP9	HTH_59 domain-containing protein	NA
UHGV-0376773_25	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0376773_25	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0376773_25	Structural annotation	PF20038, NF040990	NA	NA
UHGV-0376773_26	KOfam	K14059	int; integrase	NA
UHGV-0376773_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0376773_26	UniRef90	UniRef90_A0A563DAX4	Site-specific integrase	NA
UHGV-0376773_26	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0376773_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0376773_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0376773_26	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0376773_27	Structural annotation	PF15028, COG5342	NA	NA
UHGV-0376773_28	PHROG	phrog_20936	NA	unknown function
UHGV-0376773_28	UniRef90	UniRef90_A0A134BXK6	Peptidase_M78 domain-containing protein	NA
UHGV-0376773_28	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-0376773_28	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0376773_28	Structural annotation	PF06114	NA	NA
UHGV-0376773_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0376773_29	UniRef90	UniRef90_A0A380N6N4	HTH cro/C1-type domain-containing protein	NA
UHGV-0376773_29	eggNOG-mapper	1128111.HMPREF0870_01792	Helix-turn-helix XRE-family like proteins	NA
UHGV-0376773_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0376773_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0376773_29	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0376773_30	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0376773_30	UniRef90	UniRef90_A0A380N5B8	HTH cro/C1-type domain-containing protein	NA
UHGV-0376773_30	eggNOG-mapper	1128111.HMPREF0870_01791	Helix-turn-helix XRE-family like proteins	NA
UHGV-0376773_30	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0376773_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0376773_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0376773_31	UniRef90	UniRef90_A0A563DA47	XRE family transcriptional regulator	NA
UHGV-0376773_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0376773_31	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0376773_31	Structural annotation	PF13443, MF_00535, TIGR03070, COG1813	NA	NA
UHGV-0376773_33	PHROG	phrog_6058	NA	unknown function
UHGV-0376773_33	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0376773_35	UniRef90	UniRef90_A0A380N5Z7	HTH cro/C1-type domain-containing protein	NA
UHGV-0376773_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0376773_35	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0376773_37	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-0376773_37	eggNOG-mapper	1401067.HMPREF0872_06890	NA	NA
UHGV-0376773_37	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-0376773_41	PHROG	phrog_18562	NA	unknown function
UHGV-0376773_41	eggNOG-mapper	1128111.HMPREF0870_01783	NA	NA
UHGV-0376773_42	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0376773_42	UniRef90	UniRef90_A0A380N7U3	Inactivated superfamily I helicase	NA
UHGV-0376773_42	eggNOG-mapper	1128111.HMPREF0870_01782	NA	NA
UHGV-0376773_42	Pfam	PF10926	NA	DUF2800
UHGV-0376773_42	COG	COG2887	RecB family exonuclease	NA
UHGV-0376773_42	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0376773_43	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0376773_43	UniRef90	UniRef90_A0A2S7YZ12	NA	NA
UHGV-0376773_43	eggNOG-mapper	1128111.HMPREF0870_01781	NA	NA
UHGV-0376773_43	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0376773_43	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0376773_44	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0376773_44	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0376773_44	UniRef90	UniRef90_A0A380N5A7	DNA polymerase I, thermostable	NA
UHGV-0376773_44	eggNOG-mapper	1128111.HMPREF0870_01780	DNA polymerase	NA
UHGV-0376773_44	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0376773_44	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0376773_44	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0376773_45	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0376773_45	UniRef90	UniRef90_A0A380N688	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0376773_45	eggNOG-mapper	1128111.HMPREF0870_01779	Virulence-associated protein E	NA
UHGV-0376773_45	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0376773_45	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0376773_45	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0376773_46	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0376773_46	UniRef90	UniRef90_A0A380N7B1	VRR-NUC domain	NA
UHGV-0376773_46	eggNOG-mapper	1128111.HMPREF0870_01778	VRR_NUC	NA
UHGV-0376773_46	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0376773_48	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0376773_48	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0376773_48	UniRef90	UniRef90_A0A380N5Y7	SNF2 family N-terminal domain	NA
UHGV-0376773_48	eggNOG-mapper	1128111.HMPREF0870_01776	SNF2 family	NA
UHGV-0376773_48	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0376773_48	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0376773_48	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0376773_48	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0376773_48	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0376773_49	PHROG	phrog_2776	NA	unknown function
UHGV-0376773_49	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0376773_49	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0376773_50	PHROG	phrog_236	nucleotide kinase	other
UHGV-0376773_50	UniRef90	UniRef90_A0A380N7U2	NA	NA
UHGV-0376773_50	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-0376773_50	Pfam	PF11753	NA	DUF3310
UHGV-0376773_50	Structural annotation	PF11753	NA	NA
UHGV-0376773_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0376773_52	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0376773_52	Structural annotation	PF07374, MF_00674, TIGR01636, COG1191	NA	NA