UHGV-0377981

Genome information

Genome length 28,906 bps

CDS count 39

Completeness 56.04% (medium-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0377981
vOTU ID	vOTU-023208
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	k119_4374_round1256~4554515
BioSample	SAMN00023811
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.18
Jumbo phage	No

Genome content
Genome length	28,906 bps
GC content	29.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.58%
Average CDS length	665.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0377981_1	PHROG	phrog_13589	NA	unknown function
UHGV-0377981_1	eggNOG-mapper	1345695.CLSA_c22960	NA	NA
UHGV-0377981_1	COG	COG4926	Phage-related protein	NA
UHGV-0377981_2	PHROG	phrog_6	baseplate protein	tail
UHGV-0377981_2	UniRef90	UniRef90_A0A512TQC4	Baseplate_J domain-containing protein	NA
UHGV-0377981_2	eggNOG-mapper	290402.Cbei_1656	Baseplate J-like protein	NA
UHGV-0377981_2	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0377981_2	COG	COG3299	NA	NA
UHGV-0377981_2	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0377981_3	PHROG	phrog_120	baseplate protein	tail
UHGV-0377981_3	UniRef90	UniRef90_UPI00156E3A45	NA	NA
UHGV-0377981_3	eggNOG-mapper	1345695.CLSA_c35420	NA	NA
UHGV-0377981_3	Pfam	PF10934	NA	DUF2634
UHGV-0377981_3	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0377981_4	PHROG	phrog_2403	NA	unknown function
UHGV-0377981_4	eggNOG-mapper	1033737.CAEV01000076_gene498	NA	NA
UHGV-0377981_5	PHROG	phrog_400	tail protein	tail
UHGV-0377981_5	UniRef90	UniRef90_UPI001C123F85	XkdQ	NA
UHGV-0377981_5	eggNOG-mapper	1211817.CCAT010000049_gene2510	NA	NA
UHGV-0377981_5	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0377981_6	UniRef90	UniRef90_A0A1S8RPC6	Bacterial SH3 domain protein	NA
UHGV-0377981_6	eggNOG-mapper	290402.Cbei_1652	protein containing LysM domain	NA
UHGV-0377981_6	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0377981_7	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0377981_7	UniRef90	UniRef90_A0A7U9D4T7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0377981_7	eggNOG-mapper	1211817.CCAT010000049_gene2507	phage tail tape measure protein	NA
UHGV-0377981_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0377981_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0377981_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0377981_8	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0377981_8	UniRef90	UniRef90_U5MUQ9	Phage XkdN-like protein	NA
UHGV-0377981_8	eggNOG-mapper	1415774.U728_819	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0377981_8	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0377981_8	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0377981_9	PHROG	phrog_365	tail protein	tail
UHGV-0377981_9	UniRef90	UniRef90_A0A0F4VR72	Phage-like element PBSX protein xkdM	NA
UHGV-0377981_9	eggNOG-mapper	1211817.CCAT010000049_gene2505	Phage tail tube protein	NA
UHGV-0377981_9	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0377981_9	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0377981_10	PHROG	phrog_279	tail sheath	tail
UHGV-0377981_10	UniRef90	UniRef90_A0A0F4VTJ4	Phage-like element PBSX protein xkdK	NA
UHGV-0377981_10	eggNOG-mapper	290402.Cbei_1647	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0377981_10	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0377981_10	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0377981_10	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0377981_10	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0377981_11	PHROG	phrog_1939	NA	unknown function
UHGV-0377981_11	eggNOG-mapper	1204534.J9QEB6_9CAUD	NA	NA
UHGV-0377981_12	PHROG	phrog_2146	NA	unknown function
UHGV-0377981_12	eggNOG-mapper	1033737.CAEV01000076_gene507	NA	NA
UHGV-0377981_12	Structural annotation	PF20765, PF11367, COG5003	NA	NA
UHGV-0377981_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0377981_13	UniRef90	UniRef90_A0A2H4J736	Putative tail component protein	NA
UHGV-0377981_13	eggNOG-mapper	1415774.U728_824	Phage virion morphogenesis	NA
UHGV-0377981_13	COG	COG5005	NA	NA
UHGV-0377981_13	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0377981_14	PHROG	phrog_2405	NA	unknown function
UHGV-0377981_14	eggNOG-mapper	1211817.CCAT010000049_gene2500	NA	NA
UHGV-0377981_14	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0377981_15	PHROG	phrog_4020	NA	unknown function
UHGV-0377981_15	eggNOG-mapper	1415774.U728_826	NA	NA
UHGV-0377981_16	PHROG	phrog_5133	NA	unknown function
UHGV-0377981_17	PHROG	phrog_29	major head protein	head and packaging
UHGV-0377981_17	UniRef90	UniRef90_UPI00040C47DB	major capsid protein	NA
UHGV-0377981_17	eggNOG-mapper	1211817.CCAT010000049_gene2497	Phage major capsid protein E	NA
UHGV-0377981_17	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0377981_17	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0377981_18	PHROG	phrog_909	major head protein	head and packaging
UHGV-0377981_18	eggNOG-mapper	1211817.CCAT010000049_gene2496	NA	NA
UHGV-0377981_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0377981_19	UniRef90	UniRef90_UPI000405462D	phage scaffolding protein	NA
UHGV-0377981_19	eggNOG-mapper	1211817.CCAT010000049_gene2495	Phage minor structural protein GP20	NA
UHGV-0377981_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0377981_19	Structural annotation	PF06810	NA	NA
UHGV-0377981_21	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-0377981_21	UniRef90	UniRef90_A0A0F4VTF7	Exonuclease SbcC	NA
UHGV-0377981_21	eggNOG-mapper	1211817.CCAT010000049_gene2493	NA	NA
UHGV-0377981_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0377981_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0377981_22	UniRef90	UniRef90_UPI0003F6EF03	phage portal protein	NA
UHGV-0377981_22	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0377981_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0377981_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0377981_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0377981_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0377981_23	UniRef90	UniRef90_UPI0006848D89	PBSX family phage terminase large subunit	NA
UHGV-0377981_23	eggNOG-mapper	1151292.QEW_3261	Phage terminase, large subunit, PBSX family	NA
UHGV-0377981_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0377981_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0377981_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0377981_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0377981_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0377981_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0377981_24	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0377981_24	UniRef90	UniRef90_UPI00040BE1BA	terminase small subunit	NA
UHGV-0377981_24	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0377981_24	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0377981_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0377981_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0377981_24	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0377981_25	eggNOG-mapper	632245.CLP_1639	NA	NA
UHGV-0377981_27	UniRef90	UniRef90_C4IB61	Putative membrane protein	NA
UHGV-0377981_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0377981_28	UniRef90	UniRef90_A0A336QB97	NA	NA
UHGV-0377981_28	eggNOG-mapper	1391647.AVSV01000022_gene2550	NA	NA
UHGV-0377981_28	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0377981_30	COG	COG3228	Mlc titration factor MtfA, regulates ptsG expression	NA
UHGV-0377981_32	PHROG	phrog_1672	NA	unknown function
UHGV-0377981_32	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0377981_32	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0377981_34	eggNOG-mapper	632245.CLP_2632	NA	NA
UHGV-0377981_35	eggNOG-mapper	632245.CLP_2714	NA	NA
UHGV-0377981_36	eggNOG-mapper	632245.CLP_1627	by glimmer	NA
UHGV-0377981_37	PHROG	phrog_15215	NA	unknown function
UHGV-0377981_37	eggNOG-mapper	632245.CLP_2713	NA	NA
UHGV-0377981_37	Structural annotation	PF17516, MF_01549, NF000331, COG5475	NA	NA
UHGV-0377981_38	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0377981_38	UniRef90	UniRef90_UPI0014943169	replication protein	NA
UHGV-0377981_38	eggNOG-mapper	1280689.AUJC01000001_gene1995	DnaD domain protein	NA
UHGV-0377981_38	COG	COG3935	DNA replication protein DnaD	NA