UHGV-0382302

Genome information

Genome length 36,491 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0382302
vOTU ID	vOTU-065569
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2942
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.45
Jumbo phage	No

Genome content
Genome length	36,491 bps
GC content	48.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	93.37%
Average CDS length	520.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0382302_1	PHROG	phrog_750	NA	unknown function
UHGV-0382302_1	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0382302_1	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0382302_3	PHROG	phrog_585	NA	unknown function
UHGV-0382302_3	UniRef90	UniRef90_UPI001966EB25	NA	NA
UHGV-0382302_3	eggNOG-mapper	663952.SDD27957_07440	NA	NA
UHGV-0382302_3	Pfam	PF10711	NA	DUF2513
UHGV-0382302_3	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0382302_4	AcrCatalog	cluster_35670	NA	NA
UHGV-0382302_4	Structural annotation	NF042413	NA	NA
UHGV-0382302_5	PHROG	phrog_1123	NA	unknown function
UHGV-0382302_5	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-0382302_7	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0382302_7	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0382302_7	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0382302_7	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0382302_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0382302_8	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0382302_8	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0382302_9	PHROG	phrog_7566	NA	unknown function
UHGV-0382302_9	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0382302_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0382302_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0382302_10	UniRef90	UniRef90_A0A3A6ECW8	Single-stranded DNA-binding protein	NA
UHGV-0382302_10	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0382302_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0382302_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0382302_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0382302_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0382302_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0382302_11	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0382302_11	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0382302_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0382302_11	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0382302_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0382302_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0382302_12	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-0382302_12	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-0382302_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0382302_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0382302_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0382302_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0382302_14	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0382302_14	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0382302_14	eggNOG-mapper	342113.DM82_1124	NA	NA
UHGV-0382302_14	Pfam	PF06356	NA	DUF1064
UHGV-0382302_14	Structural annotation	PF06356	NA	NA
UHGV-0382302_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0382302_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0382302_16	UniRef90	UniRef90_A0A372WY48	PAPS_reduct domain-containing protein	NA
UHGV-0382302_16	eggNOG-mapper	665956.HMPREF1032_02557	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0382302_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0382302_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0382302_16	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0382302_17	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0382302_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0382302_21	UniRef90	UniRef90_UPI0009E43F9B	Lar family restriction alleviation protein	NA
UHGV-0382302_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0382302_21	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0382302_21	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0382302_24	PHROG	phrog_38832	NA	unknown function
UHGV-0382302_24	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0382302_27	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0382302_28	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0382302_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0382302_30	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0382302_30	eggNOG-mapper	588581.Cpap_1498	COG NOG14118 non supervised orthologous group	NA
UHGV-0382302_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0382302_32	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0382302_33	UniRef90	UniRef90_A0A3A6E886	Helix-turn-helix domain-containing protein	NA
UHGV-0382302_33	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0382302_33	Structural annotation	PF13542	NA	NA
UHGV-0382302_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0382302_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0382302_34	UniRef90	UniRef90_A0A3A6EPV3	PBSX family phage terminase large subunit	NA
UHGV-0382302_34	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0382302_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0382302_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0382302_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0382302_34	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0382302_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0382302_35	UniRef90	UniRef90_A0A3A6E951	Phage portal protein	NA
UHGV-0382302_35	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0382302_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0382302_35	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0382302_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0382302_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0382302_36	UniRef90	UniRef90_UPI001E5C8078	phage minor capsid protein	NA
UHGV-0382302_36	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0382302_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0382302_36	COG	COG2369	NA	NA
UHGV-0382302_36	Structural annotation	PF06152	NA	NA
UHGV-0382302_38	eggNOG-mapper	665956.HMPREF1032_03797	NA	NA
UHGV-0382302_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0382302_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0382302_42	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0382302_42	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0382302_42	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0382302_43	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0382302_43	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-0382302_44	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0382302_44	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0382302_45	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0382302_45	UniRef90	UniRef90_UPI001899C432	minor capsid protein	NA
UHGV-0382302_45	eggNOG-mapper	1214217.ALNF01000014_gene1371	Minor capsid protein	NA
UHGV-0382302_45	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0382302_45	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0382302_46	Structural annotation	PF12691	NA	NA
UHGV-0382302_47	PHROG	phrog_820	major tail protein	tail
UHGV-0382302_47	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0382302_47	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0382302_47	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0382302_47	COG	COG5492	NA	NA
UHGV-0382302_47	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0382302_48	Structural annotation	PF10666	NA	NA
UHGV-0382302_49	PHROG	phrog_706	NA	unknown function
UHGV-0382302_49	UniRef90	UniRef90_UPI000C819E80	Gp15 family bacteriophage protein	NA
UHGV-0382302_49	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0382302_49	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0382302_49	Structural annotation	PF06854	NA	NA
UHGV-0382302_50	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0382302_50	UniRef90	UniRef90_A0A3A6E908	TMP_3 domain-containing protein	NA
UHGV-0382302_50	eggNOG-mapper	883066.HMPREF9233_00612	tape measure	NA
UHGV-0382302_50	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0382302_50	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0382302_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0382302_50	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0382302_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0382302_51	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0382302_51	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0382302_52	PHROG	phrog_5555	tail protein	tail
UHGV-0382302_52	UniRef90	UniRef90_A0A3A6ECU0	Prophage_tail domain-containing protein	NA
UHGV-0382302_52	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0382302_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0382302_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0382302_52	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0382302_52	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0382302_53	PHROG	phrog_16573	NA	unknown function
UHGV-0382302_53	UniRef90	UniRef90_A0A0D8IYB2	BppU_N domain-containing protein	NA
UHGV-0382302_53	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0382302_53	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0382302_54	PHROG	phrog_24451	NA	unknown function
UHGV-0382302_54	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-0382302_55	PHROG	phrog_134	NA	unknown function
UHGV-0382302_55	UniRef90	UniRef90_A0A372V0Q1	XkdX family protein	NA
UHGV-0382302_55	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0382302_55	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0382302_55	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0382302_55	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0382302_56	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0382302_56	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0382302_56	UniRef90	UniRef90_A0A0W7TLV7	Peptidase_M23 domain-containing protein	NA
UHGV-0382302_56	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0382302_56	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0382302_56	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0382302_56	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0382302_57	PHROG	phrog_1863	NA	unknown function
UHGV-0382302_57	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0382302_58	PHROG	phrog_1129	holin	lysis
UHGV-0382302_58	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0382302_58	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0382302_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0382302_58	Structural annotation	PF06946	NA	NA
UHGV-0382302_61	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0382302_61	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0382302_61	UniRef90	UniRef90_UPI0009E291B2	helix-turn-helix transcriptional regulator	NA
UHGV-0382302_61	eggNOG-mapper	1235802.C823_05687	sequence-specific DNA binding	NA
UHGV-0382302_61	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0382302_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0382302_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0382302_61	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0382302_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0382302_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0382302_62	UniRef90	UniRef90_A0A3A6E4S5	Recombinase family protein	NA
UHGV-0382302_62	eggNOG-mapper	1291050.JAGE01000001_gene2185	NA	NA
UHGV-0382302_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0382302_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-0382302_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0382302_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0382302_62	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0382302_64	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0382302_64	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0382302_64	UniRef90	UniRef90_A0A0D8IX18	HTH cro/C1-type domain-containing protein	NA
UHGV-0382302_64	eggNOG-mapper	665956.HMPREF1032_01654	Peptidase S24-like	NA
UHGV-0382302_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0382302_64	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0382302_64	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0382302_64	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0382302_65	UniRef90	UniRef90_A0A0D8IY67	HTH cro/C1-type domain-containing protein	NA
UHGV-0382302_65	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0382302_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0382302_65	Structural annotation	PF08667, NF041951, COG3655	NA	NA