UHGV-0382355

Genome information

vOTU vOTU-020077

Genome length 24,102 bps

CDS count 30

Completeness 68.80% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0382355
vOTU ID	vOTU-020077
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4808
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.21
Jumbo phage	No

Genome content
Genome length	24,102 bps
GC content	30.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	94.90%
Average CDS length	765.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0382355_1	PHROG	phrog_31229	NA	unknown function
UHGV-0382355_1	eggNOG-mapper	1121333.JMLH01000001_gene1904	NA	NA
UHGV-0382355_2	KOfam	K14059	int; integrase	NA
UHGV-0382355_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0382355_2	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-0382355_2	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-0382355_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0382355_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0382355_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0382355_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0382355_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0382355_7	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-0382355_7	UniRef90	UniRef90_UPI001D0720C7	CRISPR-associated protein Cas5	NA
UHGV-0382355_7	eggNOG-mapper	1415775.U729_2217	CRISPR-associated protein Cas5	NA
UHGV-0382355_7	PADLOC	cas_Cas5t	CRISPR-associated protein Cas5, subtype I-B/TNEAP	CRISPR-CAS
UHGV-0382355_7	NCBIFam	TIGR02593.1	CRISPR-associated protein Cas5	NA
UHGV-0382355_7	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-0382355_7	Structural annotation	PF09704, TIGR01895, COG1688	NA	NA
UHGV-0382355_10	PHROG	phrog_21357	endolysin	lysis
UHGV-0382355_10	UniRef90	UniRef90_B1C4A4	SH3 domain protein	NA
UHGV-0382355_10	eggNOG-mapper	428126.CLOSPI_02072	lysozyme activity	NA
UHGV-0382355_10	Pfam	PF05257	CHAP domain	CHAP
UHGV-0382355_10	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0382355_10	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0382355_10	COG	COG1388	LysM repeat	NA
UHGV-0382355_10	Structural annotation	PF10030, TIGR02594, COG4991, COG3942	NA	NA
UHGV-0382355_12	PHROG	phrog_443	holin	lysis
UHGV-0382355_12	UniRef90	UniRef90_UPI0004AE7A41	holin	NA
UHGV-0382355_12	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0382355_12	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0382355_12	Structural annotation	PF16945	NA	NA
UHGV-0382355_13	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0382355_13	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0382355_14	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0382355_14	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-0382355_15	PHROG	phrog_24267	NA	unknown function
UHGV-0382355_15	UniRef90	UniRef90_UPI000C07ED94	NA	NA
UHGV-0382355_15	eggNOG-mapper	553973.CLOHYLEM_06931	tail collar domain protein	NA
UHGV-0382355_15	COG	COG4675	Phage tail collar domain	NA
UHGV-0382355_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0382355_16	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-0382355_16	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0382355_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0382355_16	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0382355_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0382355_16	COG	COG4926	Phage-related protein	NA
UHGV-0382355_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0382355_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0382355_17	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0382355_17	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0382355_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0382355_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0382355_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0382355_18	PHROG	phrog_23464	NA	unknown function
UHGV-0382355_18	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0382355_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0382355_18	Structural annotation	PF20155	NA	NA
UHGV-0382355_20	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0382355_21	PHROG	phrog_88	major tail protein	tail
UHGV-0382355_21	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-0382355_21	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0382355_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0382355_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0382355_22	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0382355_22	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-0382355_22	Structural annotation	TIGR01725	NA	NA
UHGV-0382355_23	PHROG	phrog_78	tail terminator	connector
UHGV-0382355_23	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0382355_23	Structural annotation	PF05657	NA	NA
UHGV-0382355_24	PHROG	phrog_19734	NA	unknown function
UHGV-0382355_24	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-0382355_24	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0382355_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0382355_25	PHROG	phrog_2550	NA	unknown function
UHGV-0382355_25	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0382355_25	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0382355_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0382355_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0382355_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0382355_26	UniRef90	UniRef90_N9WI02	HK97 family phage major capsid protein	NA
UHGV-0382355_26	eggNOG-mapper	999413.HMPREF1094_02008	phage major capsid protein, HK97 family	NA
UHGV-0382355_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0382355_26	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0382355_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0382355_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0382355_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0382355_27	KOfam	K06904	NA	NA
UHGV-0382355_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0382355_27	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-0382355_27	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0382355_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0382355_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0382355_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0382355_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0382355_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0382355_28	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-0382355_28	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0382355_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0382355_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0382355_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0382355_28	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0382355_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0382355_29	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-0382355_29	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0382355_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0382355_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0382355_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0382355_29	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0382355_30	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0382355_30	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-0382355_30	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0382355_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0382355_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA