UHGV-0383109

Genome information

Genome length 26,077 bps

CDS count 32

Completeness 63.61% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0383109
vOTU ID	vOTU-027388
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4492
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.32
Jumbo phage	No

Genome content
Genome length	26,077 bps
GC content	42.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.70%
Average CDS length	757.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0383109_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0383109_1	PHROG	phrog_2742	endolysin	lysis
UHGV-0383109_1	UniRef90	UniRef90_H1BAK9	MurNAc-LAA domain-containing protein	NA
UHGV-0383109_1	eggNOG-mapper	908340.HMPREF9406_0809	pathogenesis	NA
UHGV-0383109_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0383109_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0383109_1	Structural annotation	PF01520, PF08460, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0383109_2	PHROG	phrog_4105	NA	unknown function
UHGV-0383109_2	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0383109_4	PHROG	phrog_16267	NA	unknown function
UHGV-0383109_4	UniRef90	UniRef90_UPI0008EB4AF8	tail fiber domain-containing protein	NA
UHGV-0383109_4	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0383109_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0383109_4	COG	COG4926	Phage-related protein	NA
UHGV-0383109_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0383109_5	PHROG	phrog_1401	NA	unknown function
UHGV-0383109_5	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-0383109_5	Structural annotation	PF07761	NA	NA
UHGV-0383109_6	PHROG	phrog_2566	NA	unknown function
UHGV-0383109_6	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0383109_7	PHROG	phrog_1194	NA	unknown function
UHGV-0383109_7	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-0383109_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0383109_8	PHROG	phrog_37487	NA	unknown function
UHGV-0383109_8	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-0383109_8	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-0383109_8	COG	COG1511	NA	NA
UHGV-0383109_9	PHROG	phrog_8355	NA	unknown function
UHGV-0383109_9	UniRef90	UniRef90_A0A4R3TDU8	Bacteriophage Gp15 protein	NA
UHGV-0383109_9	eggNOG-mapper	552396.HMPREF0863_01643	NA	NA
UHGV-0383109_10	PHROG	phrog_8300	NA	unknown function
UHGV-0383109_10	eggNOG-mapper	1232449.BAHV02000018_gene1519	NA	NA
UHGV-0383109_10	Structural annotation	PF06896	NA	NA
UHGV-0383109_11	PHROG	phrog_820	major tail protein	tail
UHGV-0383109_11	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-0383109_11	COG	COG5492	NA	NA
UHGV-0383109_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0383109_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0383109_12	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-0383109_12	eggNOG-mapper	552396.HMPREF0863_01640	NA	NA
UHGV-0383109_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0383109_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0383109_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0383109_13	UniRef90	UniRef90_UPI001C3956D2	minor capsid protein	NA
UHGV-0383109_13	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-0383109_14	PHROG	phrog_8710	NA	unknown function
UHGV-0383109_14	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-0383109_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0383109_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0383109_15	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0383109_16	PHROG	phrog_1378	NA	unknown function
UHGV-0383109_16	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0383109_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0383109_17	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-0383109_17	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0383109_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0383109_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0383109_18	eggNOG-mapper	552396.HMPREF0863_01634	NA	NA
UHGV-0383109_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0383109_21	UniRef90	UniRef90_A0A6B1RQY7	Capsid protein	NA
UHGV-0383109_21	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-0383109_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0383109_21	Structural annotation	PF06152	NA	NA
UHGV-0383109_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0383109_22	UniRef90	UniRef90_A0A1C6JYD4	Phage portal protein, putative, A118 family	NA
UHGV-0383109_22	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0383109_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0383109_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0383109_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0383109_23	UniRef90	UniRef90_U5F7S3	PBSX family phage terminase, large subunit	NA
UHGV-0383109_23	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0383109_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0383109_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0383109_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0383109_24	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0383109_24	UniRef90	UniRef90_UPI001F065150	terminase small subunit	NA
UHGV-0383109_24	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0383109_24	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0383109_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0383109_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0383109_24	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0383109_26	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-0383109_28	PHROG	phrog_2776	NA	unknown function
UHGV-0383109_28	eggNOG-mapper	697329.Rumal_3412	NA	NA
UHGV-0383109_28	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0383109_29	PHROG	phrog_4400	NA	unknown function
UHGV-0383109_29	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0383109_29	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0383109_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0383109_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0383109_30	UniRef90	UniRef90_UPI001C384F19	single-stranded DNA-binding protein	NA
UHGV-0383109_30	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0383109_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0383109_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0383109_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0383109_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0383109_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0383109_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0383109_32	UniRef90	UniRef90_N9V9T3	Helicase ATP-binding domain-containing protein	NA
UHGV-0383109_32	eggNOG-mapper	908340.HMPREF9406_2595	SNF2 family N-terminal domain	NA
UHGV-0383109_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0383109_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0383109_32	Structural annotation	PF16203, MF_00661, NF002340, COG1061	NA	NA