UHGV-0383317

Genome information

vOTU vOTU-020716

Genome length 28,701 bps

CDS count 44

Completeness 77.25% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0383317
vOTU ID	vOTU-020716
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4149
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.91
Jumbo phage	No

Genome content
Genome length	28,701 bps
GC content	37.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.45%
Average CDS length	613.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0383317_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0383317_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0383317_1	UniRef90	UniRef90_A0A4R3TF60	SOS-response transcriptional repressor LexA	NA
UHGV-0383317_1	eggNOG-mapper	552396.HMPREF0863_02447	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0383317_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0383317_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0383317_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0383317_1	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0383317_2	PHROG	phrog_9418	NA	unknown function
UHGV-0383317_2	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0383317_2	Structural annotation	PF10233	NA	NA
UHGV-0383317_3	KOfam	K14059	int; integrase	NA
UHGV-0383317_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0383317_3	UniRef90	UniRef90_U5F5D8	Tyr recombinase domain-containing protein	NA
UHGV-0383317_3	eggNOG-mapper	552396.HMPREF0863_02449	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0383317_3	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0383317_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0383317_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0383317_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0383317_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0383317_4	UniRef90	UniRef90_UPI0018A96F5E	helix-turn-helix transcriptional regulator	NA
UHGV-0383317_6	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0383317_6	UniRef90	UniRef90_A0A4R3TEP9	AP2 domain-containing protein	NA
UHGV-0383317_6	eggNOG-mapper	246199.CUS_5638	NA	NA
UHGV-0383317_6	Pfam	PF00847	AP2 domain	AP2
UHGV-0383317_6	Structural annotation	PF00847	NA	NA
UHGV-0383317_7	PHROG	phrog_8781	endolysin	lysis
UHGV-0383317_7	UniRef90	UniRef90_UPI001D099D17	CHAP domain-containing protein	NA
UHGV-0383317_7	eggNOG-mapper	552396.HMPREF0863_01651	lysozyme activity	NA
UHGV-0383317_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-0383317_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0383317_7	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0383317_8	PHROG	phrog_1863	NA	unknown function
UHGV-0383317_8	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0383317_11	PHROG	phrog_372	tail protein	tail
UHGV-0383317_11	UniRef90	UniRef90_UPI001D001C14	NA	NA
UHGV-0383317_11	eggNOG-mapper	469596.HMPREF9488_01319	NA	NA
UHGV-0383317_11	Pfam	PF05895	NA	DUF859
UHGV-0383317_11	Structural annotation	PF05895, MF_04116, NF010681, NF012201, COG3291	NA	NA
UHGV-0383317_12	PHROG	phrog_6616	tail protein	tail
UHGV-0383317_12	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0383317_13	PHROG	phrog_1194	NA	unknown function
UHGV-0383317_13	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0383317_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0383317_14	eggNOG-mapper	1449342.JQMR01000001_gene987	tape measure	NA
UHGV-0383317_14	COG	COG3953	SLT domain protein	NA
UHGV-0383317_15	PHROG	phrog_706	NA	unknown function
UHGV-0383317_15	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0383317_15	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0383317_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0383317_15	Structural annotation	PF06854	NA	NA
UHGV-0383317_16	Structural annotation	PF10666	NA	NA
UHGV-0383317_17	PHROG	phrog_3099	NA	unknown function
UHGV-0383317_17	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0383317_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0383317_18	PHROG	phrog_3266	tail completion	connector
UHGV-0383317_18	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0383317_18	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0383317_18	Structural annotation	PF12691	NA	NA
UHGV-0383317_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0383317_19	UniRef90	UniRef90_UPI001899B8B9	minor capsid protein	NA
UHGV-0383317_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0383317_19	Structural annotation	PF11114	NA	NA
UHGV-0383317_20	PHROG	phrog_3366	NA	unknown function
UHGV-0383317_20	eggNOG-mapper	1120998.AUFC01000030_gene2238	NA	NA
UHGV-0383317_20	Pfam	PF20536	NA	DUF6751
UHGV-0383317_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0383317_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0383317_21	eggNOG-mapper	903814.ELI_3207	NA	NA
UHGV-0383317_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0383317_22	UniRef90	UniRef90_A0A416DTJ6	Phage capsid protein	NA
UHGV-0383317_22	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0383317_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0383317_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0383317_23	UniRef90	UniRef90_A0A6W4RVH9	Scaffolding protein	NA
UHGV-0383317_23	eggNOG-mapper	272626.lin0108	Phage minor structural protein GP20	NA
UHGV-0383317_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0383317_23	Structural annotation	PF06810	NA	NA
UHGV-0383317_25	COG	COG3567	NA	NA
UHGV-0383317_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0383317_26	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0383317_26	eggNOG-mapper	1539298.JO41_12785	Phage minor capsid protein 2	NA
UHGV-0383317_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0383317_26	COG	COG2369	NA	NA
UHGV-0383317_26	Structural annotation	PF06152	NA	NA
UHGV-0383317_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0383317_27	UniRef90	UniRef90_UPI001F061150	phage portal protein	NA
UHGV-0383317_27	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0383317_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0383317_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0383317_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0383317_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0383317_28	UniRef90	UniRef90_A8RC01	Phage terminase, large subunit, PBSX family	NA
UHGV-0383317_28	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0383317_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0383317_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0383317_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0383317_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0383317_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0383317_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0383317_29	UniRef90	UniRef90_UPI000E52C41D	terminase small subunit	NA
UHGV-0383317_29	eggNOG-mapper	428127.EUBDOL_01230	terminase (Small subunit)	NA
UHGV-0383317_29	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0383317_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0383317_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0383317_29	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0383317_31	PHROG	phrog_1233	NA	unknown function
UHGV-0383317_31	eggNOG-mapper	1232449.BAHV02000018_gene1535	NA	NA
UHGV-0383317_35	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0383317_35	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0383317_40	PHROG	phrog_23707	NA	unknown function
UHGV-0383317_40	eggNOG-mapper	552398.HMPREF0866_01624	NA	NA
UHGV-0383317_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0383317_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0383317_42	UniRef90	UniRef90_A0A4R3TFM5	Single-stranded DNA-binding protein	NA
UHGV-0383317_42	eggNOG-mapper	552396.HMPREF0863_00560	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0383317_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0383317_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0383317_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0383317_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0383317_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0383317_43	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0383317_43	UniRef90	UniRef90_UPI00143D4F46	NA	NA
UHGV-0383317_43	eggNOG-mapper	999413.HMPREF1094_04677	NA	NA
UHGV-0383317_43	Pfam	PF12961	NA	DUF3850
UHGV-0383317_43	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA