UHGV-0383918

Genome information

vOTU vOTU-020360

Genome length 35,153 bps

CDS count 56

Completeness 87.28% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0383918
vOTU ID	vOTU-020360
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_3174
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.25
Jumbo phage	No

Genome content
Genome length	35,153 bps
GC content	47.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.73%
Average CDS length	579.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0383918_1	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0383918_1	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0383918_2	PHROG	phrog_1129	holin	lysis
UHGV-0383918_2	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0383918_2	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0383918_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0383918_2	Structural annotation	PF06946	NA	NA
UHGV-0383918_3	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0383918_3	PHROG	phrog_3088	amidase	lysis
UHGV-0383918_3	UniRef90	UniRef90_A0A174XN03	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0383918_3	eggNOG-mapper	1151292.QEW_0991	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0383918_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0383918_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0383918_3	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0383918_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0383918_4	UniRef90	UniRef90_UPI0012D8A0BE	helix-turn-helix transcriptional regulator	NA
UHGV-0383918_4	eggNOG-mapper	742735.HMPREF9467_01735	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0383918_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0383918_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0383918_4	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0383918_7	KOfam	K14059	int; integrase	NA
UHGV-0383918_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0383918_7	UniRef90	UniRef90_A0A174XEY3	Integrase family protein	NA
UHGV-0383918_7	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0383918_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0383918_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0383918_7	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0383918_8	PHROG	phrog_7854	endolysin	lysis
UHGV-0383918_8	UniRef90	UniRef90_UPI0003F93139	NA	NA
UHGV-0383918_8	eggNOG-mapper	1304866.K413DRAFT_4757	cell wall binding	NA
UHGV-0383918_8	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0383918_10	PHROG	phrog_7823	NA	unknown function
UHGV-0383918_10	eggNOG-mapper	33035.JPJF01000158_gene3562	NA	NA
UHGV-0383918_11	PHROG	phrog_87	metallo-protease	other
UHGV-0383918_11	UniRef90	UniRef90_A0A3R6LPT6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0383918_11	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0383918_11	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0383918_11	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0383918_11	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0383918_12	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0383918_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0383918_12	UniRef90	UniRef90_A0A417C2R0	XRE family transcriptional regulator	NA
UHGV-0383918_12	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0383918_12	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0383918_12	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0383918_12	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0383918_13	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0383918_13	UniRef90	UniRef90_A0A3E3HWE5	XRE family transcriptional regulator	NA
UHGV-0383918_13	eggNOG-mapper	574376.BAMA_16250	Helix-turn-helix XRE-family like proteins	NA
UHGV-0383918_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0383918_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0383918_13	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0383918_14	PHROG	phrog_31760	NA	unknown function
UHGV-0383918_25	PHROG	phrog_674	NA	unknown function
UHGV-0383918_25	UniRef90	UniRef90_A0A3E2U708	NA	NA
UHGV-0383918_25	eggNOG-mapper	1298920.KI911353_gene4871	NA	NA
UHGV-0383918_25	Pfam	PF07083	NA	DUF1351
UHGV-0383918_25	Structural annotation	PF07083	NA	NA
UHGV-0383918_26	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0383918_26	UniRef90	UniRef90_UPI001A9A5EAC	ERF family protein	NA
UHGV-0383918_26	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0383918_26	Pfam	PF04404	ERF superfamily	ERF
UHGV-0383918_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0383918_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0383918_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0383918_27	UniRef90	UniRef90_UPI0011DCC330	single-stranded DNA-binding protein	NA
UHGV-0383918_27	eggNOG-mapper	1304866.K413DRAFT_1332	Single-stranded DNA-binding protein	NA
UHGV-0383918_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0383918_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0383918_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0383918_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0383918_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0383918_28	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0383918_28	UniRef90	UniRef90_D3ASX5	ERCC4 domain-containing protein	NA
UHGV-0383918_28	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-0383918_28	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0383918_28	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0383918_29	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0383918_29	PHROG	phrog_11992	NA	unknown function
UHGV-0383918_29	UniRef90	UniRef90_A0A1C5TEL2	DNA primase	NA
UHGV-0383918_29	eggNOG-mapper	1298920.KI911353_gene4867	CHC2 zinc finger	NA
UHGV-0383918_29	PADLOC	drt-UG29	DRT	DRT
UHGV-0383918_29	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0383918_29	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0383918_29	Structural annotation	PF01807	NA	NA
UHGV-0383918_30	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0383918_30	UniRef90	UniRef90_A0A374PA98	NA	NA
UHGV-0383918_30	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0383918_30	Pfam	PF06048	NA	DUF927
UHGV-0383918_30	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0383918_30	COG	COG5519	NA	NA
UHGV-0383918_30	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0383918_31	UniRef90	UniRef90_UPI0015E0AC01	decarboxylase	NA
UHGV-0383918_31	eggNOG-mapper	1304866.K413DRAFT_0822	NA	NA
UHGV-0383918_33	PHROG	phrog_15077	NA	unknown function
UHGV-0383918_33	eggNOG-mapper	1298920.KI911353_gene4863	NA	NA
UHGV-0383918_37	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0383918_37	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0383918_37	UniRef90	UniRef90_A0A174WGT9	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0383918_37	eggNOG-mapper	610130.Closa_0735	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0383918_37	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0383918_37	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0383918_37	COG	COG0338	DNA-adenine methylase	NA
UHGV-0383918_37	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0383918_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0383918_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0383918_38	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0383918_38	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0383918_38	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0383918_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0383918_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0383918_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0383918_39	PHROG	phrog_25231	NA	unknown function
UHGV-0383918_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0383918_40	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0383918_40	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0383918_40	Structural annotation	PF07374	NA	NA
UHGV-0383918_42	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0383918_42	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0383918_42	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0383918_42	Structural annotation	PF16677	NA	NA
UHGV-0383918_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0383918_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0383918_43	UniRef90	UniRef90_A0A174NEI6	Phage terminase, large subunit	NA
UHGV-0383918_43	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0383918_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0383918_43	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0383918_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0383918_44	UniRef90	UniRef90_A0A174NM20	Phage minor capsid protein	NA
UHGV-0383918_44	eggNOG-mapper	1117108.PAALTS15_13582	NA	NA
UHGV-0383918_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0383918_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0383918_45	UniRef90	UniRef90_A0A174NEA4	Phage minor capsid protein 2	NA
UHGV-0383918_45	eggNOG-mapper	1298920.KI911353_gene4854	Phage minor capsid protein 2	NA
UHGV-0383918_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0383918_45	COG	COG2369	NA	NA
UHGV-0383918_45	Structural annotation	PF06152	NA	NA
UHGV-0383918_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0383918_46	UniRef90	UniRef90_A0A174NLQ6	Phage minor structural protein GP20	NA
UHGV-0383918_46	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0383918_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0383918_46	Structural annotation	PF06810	NA	NA
UHGV-0383918_47	PHROG	phrog_212	major head protein	head and packaging
UHGV-0383918_47	UniRef90	UniRef90_UPI001D004754	phage capsid protein	NA
UHGV-0383918_47	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0383918_47	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0383918_47	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0383918_48	PHROG	phrog_15682	NA	unknown function
UHGV-0383918_48	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-0383918_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0383918_49	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0383918_50	PHROG	phrog_8710	NA	unknown function
UHGV-0383918_50	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0383918_50	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0383918_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0383918_51	UniRef90	UniRef90_UPI001B0B5B54	minor capsid protein	NA
UHGV-0383918_51	eggNOG-mapper	1298920.KI911353_gene4846	NA	NA
UHGV-0383918_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0383918_52	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0383918_52	UniRef90	UniRef90_UPI00045E84DA	minor capsid protein	NA
UHGV-0383918_52	eggNOG-mapper	1298920.KI911353_gene4845	NA	NA
UHGV-0383918_52	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0383918_52	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0383918_53	PHROG	phrog_820	major tail protein	tail
UHGV-0383918_53	eggNOG-mapper	1298920.KI911353_gene4844	NA	NA
UHGV-0383918_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0383918_54	PHROG	phrog_8300	NA	unknown function
UHGV-0383918_54	eggNOG-mapper	1298920.KI911353_gene4843	NA	NA
UHGV-0383918_54	Structural annotation	PF06896	NA	NA
UHGV-0383918_55	PHROG	phrog_8355	NA	unknown function
UHGV-0383918_55	UniRef90	UniRef90_A0A174NJB8	Bacteriophage Gp15 protein	NA
UHGV-0383918_55	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0383918_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0383918_55	Structural annotation	PF06854	NA	NA
UHGV-0383918_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0383918_56	UniRef90	UniRef90_A0A174NI32	Phage-like protein	NA
UHGV-0383918_56	eggNOG-mapper	1304866.K413DRAFT_0776	phage tail tape measure protein	NA
UHGV-0383918_56	COG	COG5412	Phage-related protein	NA