UHGV-0384625

Genome information

Genome length 37,803 bps

CDS count 56

Completeness 99.40% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0384625
vOTU ID	vOTU-009700
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2731
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.93
Jumbo phage	No

Genome content
Genome length	37,803 bps
GC content	52.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.67%
Average CDS length	610.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0384625_2	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0384625_2	UniRef90	UniRef90_A0A4Z0Y769	Phage terminase, small subunit	NA
UHGV-0384625_2	eggNOG-mapper	665956.HMPREF1032_00124	NA	NA
UHGV-0384625_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0384625_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0384625_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0384625_3	UniRef90	UniRef90_UPI001C46A542	terminase large subunit	NA
UHGV-0384625_3	eggNOG-mapper	665956.HMPREF1032_00123	Phage terminase-like protein large subunit	NA
UHGV-0384625_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0384625_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0384625_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0384625_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0384625_4	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0384625_4	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0384625_4	UniRef90	UniRef90_UPI0016511A60	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0384625_4	eggNOG-mapper	665956.HMPREF1032_00122	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0384625_4	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0384625_4	Structural annotation	PF07927	NA	NA
UHGV-0384625_5	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0384625_5	UniRef90	UniRef90_G9RV20	HicB-like domain-containing protein	NA
UHGV-0384625_5	eggNOG-mapper	665956.HMPREF1032_00121	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0384625_5	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0384625_5	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0384625_5	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0384625_6	eggNOG-mapper	665956.HMPREF1032_00120	NA	NA
UHGV-0384625_6	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0384625_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0384625_8	UniRef90	UniRef90_G9RV17	HK97 family phage portal protein	NA
UHGV-0384625_8	eggNOG-mapper	665956.HMPREF1032_00118	Phage portal protein, HK97 family	NA
UHGV-0384625_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0384625_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0384625_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0384625_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0384625_9	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0384625_9	UniRef90	UniRef90_A0A6N2ZRR0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0384625_9	eggNOG-mapper	665956.HMPREF1032_00117	Belongs to the peptidase S14 family	NA
UHGV-0384625_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0384625_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0384625_9	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0384625_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0384625_10	UniRef90	UniRef90_A0A166TTY6	Phage capsid family protein	NA
UHGV-0384625_10	eggNOG-mapper	665956.HMPREF1032_00116	Phage capsid family	NA
UHGV-0384625_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0384625_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0384625_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0384625_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0384625_11	PHROG	phrog_749	NA	unknown function
UHGV-0384625_11	eggNOG-mapper	864178.E2ELI6_9CAUD	NA	NA
UHGV-0384625_12	PHROG	phrog_19734	NA	unknown function
UHGV-0384625_12	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0384625_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0384625_13	UniRef90	UniRef90_A0A8I1DFM9	HK97 gp10 family phage protein	NA
UHGV-0384625_13	eggNOG-mapper	698758.AXY_02170	NA	NA
UHGV-0384625_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0384625_14	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0384625_14	Structural annotation	PF05657, TIGR04412	NA	NA
UHGV-0384625_15	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0384625_15	eggNOG-mapper	665956.HMPREF1032_00111	NA	NA
UHGV-0384625_15	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0384625_16	PHROG	phrog_29863	NA	unknown function
UHGV-0384625_16	eggNOG-mapper	665956.HMPREF1032_00110	NA	NA
UHGV-0384625_16	Structural annotation	PF17388	NA	NA
UHGV-0384625_17	eggNOG-mapper	665956.HMPREF1032_00109	NA	NA
UHGV-0384625_18	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0384625_18	UniRef90	UniRef90_G9RV07	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0384625_18	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-0384625_18	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0384625_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0384625_19	PHROG	phrog_13564	minor tail protein	tail
UHGV-0384625_19	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-0384625_19	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0384625_19	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0384625_20	PHROG	phrog_7064	tail protein	tail
UHGV-0384625_20	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-0384625_20	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0384625_21	PHROG	phrog_5811	NA	unknown function
UHGV-0384625_21	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-0384625_23	Structural annotation	PF11514	NA	NA
UHGV-0384625_24	PHROG	phrog_5302	tail protein	tail
UHGV-0384625_24	UniRef90	UniRef90_A0A845LFH6	BppU family phage baseplate upper protein	NA
UHGV-0384625_25	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0384625_25	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0384625_25	UniRef90	UniRef90_A0A0D8J2G4	Reverse transcriptase domain-containing protein	NA
UHGV-0384625_25	eggNOG-mapper	665956.HMPREF1032_00691	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0384625_25	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0384625_25	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0384625_25	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0384625_25	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0384625_26	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0384625_26	UniRef90	UniRef90_UPI0012E0BB7D	phage tail assembly chaperone	NA
UHGV-0384625_26	eggNOG-mapper	643562.Daes_0337	NA	NA
UHGV-0384625_26	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0384625_26	Structural annotation	PF16778	NA	NA
UHGV-0384625_27	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0384625_27	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0384625_27	UniRef90	UniRef90_UPI0010652D18	M23 family metallopeptidase	NA
UHGV-0384625_27	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0384625_27	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0384625_27	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0384625_27	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0384625_28	PHROG	phrog_4105	NA	unknown function
UHGV-0384625_28	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-0384625_29	PHROG	phrog_20258	NA	unknown function
UHGV-0384625_29	eggNOG-mapper	665956.HMPREF1032_00100	NA	NA
UHGV-0384625_30	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0384625_30	UniRef90	UniRef90_G9RUZ8	HTH_59 domain-containing protein	NA
UHGV-0384625_30	eggNOG-mapper	665956.HMPREF1032_00099	NA	NA
UHGV-0384625_30	Pfam	PF10387	NA	DUF2442
UHGV-0384625_30	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0384625_31	PHROG	phrog_14333	NA	unknown function
UHGV-0384625_31	UniRef90	UniRef90_A0A7X5KSQ6	NA	NA
UHGV-0384625_31	eggNOG-mapper	665956.HMPREF1032_00098	NA	NA
UHGV-0384625_31	Pfam	PF13711	NA	DUF4160
UHGV-0384625_31	Structural annotation	PF13711	NA	NA
UHGV-0384625_32	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0384625_32	PHROG	phrog_95	integrase	integration and excision
UHGV-0384625_32	UniRef90	UniRef90_A0A3A9I8F7	Recombinase family protein	NA
UHGV-0384625_32	eggNOG-mapper	665956.HMPREF1032_00152	Resolvase, N terminal domain	NA
UHGV-0384625_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0384625_32	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0384625_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0384625_32	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0384625_34	PHROG	phrog_7115	NA	unknown function
UHGV-0384625_34	UniRef90	UniRef90_UPI00195D0C18	PH domain-containing protein	NA
UHGV-0384625_34	eggNOG-mapper	610130.Closa_4130	Bacterial PH domain	NA
UHGV-0384625_34	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0384625_34	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0384625_35	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0384625_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0384625_35	UniRef90	UniRef90_G9RV47	HTH cro/C1-type domain-containing protein	NA
UHGV-0384625_35	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-0384625_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0384625_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0384625_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0384625_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0384625_38	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0384625_38	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0384625_38	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0384625_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0384625_38	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0384625_39	PHROG	phrog_38832	NA	unknown function
UHGV-0384625_39	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0384625_39	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-0384625_40	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0384625_40	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0384625_40	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0384625_41	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0384625_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0384625_41	UniRef90	UniRef90_G9RV39	PAPS_reduct domain-containing protein	NA
UHGV-0384625_41	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0384625_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0384625_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0384625_41	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0384625_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0384625_46	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0384625_46	eggNOG-mapper	665956.HMPREF1032_00135	NA	NA
UHGV-0384625_46	Structural annotation	PF21578, TIGR00166	NA	NA
UHGV-0384625_48	PHROG	phrog_24386	NA	unknown function
UHGV-0384625_48	eggNOG-mapper	665956.HMPREF1032_00133	phosphatase activity	NA
UHGV-0384625_48	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0384625_49	PHROG	phrog_824	NA	unknown function
UHGV-0384625_49	UniRef90	UniRef90_G9RV31	VRR-NUC domain-containing protein	NA
UHGV-0384625_49	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0384625_49	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0384625_50	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0384625_50	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0384625_50	UniRef90	UniRef90_G9RV30	AAA_31 domain-containing protein	NA
UHGV-0384625_50	eggNOG-mapper	665956.HMPREF1032_00131	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0384625_50	Pfam	PF13614	AAA domain	AAA_31
UHGV-0384625_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0384625_50	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0384625_51	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0384625_51	PHROG	phrog_15982	NA	unknown function
UHGV-0384625_51	UniRef90	UniRef90_G9RV29	ParB domain-containing protein	NA
UHGV-0384625_51	eggNOG-mapper	665956.HMPREF1032_00130	ParB-like nuclease domain	NA
UHGV-0384625_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0384625_51	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0384625_53	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0384625_53	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0384625_53	UniRef90	UniRef90_G9RV27	Methyltransferase	NA
UHGV-0384625_53	eggNOG-mapper	665956.HMPREF1032_00128	DNA methylase	NA
UHGV-0384625_53	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0384625_53	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0384625_53	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0384625_53	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0384625_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0384625_55	UniRef90	UniRef90_G9RV25	Sigma70_r4 domain-containing protein	NA
UHGV-0384625_55	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0384625_55	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0384625_56	UniRef90	UniRef90_A0A7X5E0G7	HNH endonuclease	NA
UHGV-0384625_56	eggNOG-mapper	665956.HMPREF1032_00125	HNH nucleases	NA
UHGV-0384625_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA