UHGV-0384715

Genome information

vOTU vOTU-019000

Genome length 42,443 bps

CDS count 56

Completeness 71.35% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0384715
vOTU ID	vOTU-019000
vOTU representative	Yes
Source dataset	Benler
Original genome ID	OHVB01000032.1
BioSample	SAMEA3882503
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.15
Jumbo phage	No

Genome content
Genome length	42,443 bps
GC content	31.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.33%
Average CDS length	709.29 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0384715_1	KOfam	K18779	tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]	NA
UHGV-0384715_1	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0384715_1	UniRef90	UniRef90_E7DN71	Queuosine tRNA-ribosyltransferase	NA
UHGV-0384715_1	eggNOG-mapper	59241.E7DN71_BPDP1	tRNA modification	NA
UHGV-0384715_1	Structural annotation	PF00290, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0384715_2	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0384715_2	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0384715_2	UniRef90	UniRef90_D9ZNH3	Putative DNA polymerase	NA
UHGV-0384715_2	eggNOG-mapper	871584.D9ZNH3_9CAUD	DNA polymerase family A	NA
UHGV-0384715_2	PADLOC	drt-cluster58	DRT	DRT
UHGV-0384715_2	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0384715_2	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0384715_2	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0384715_3	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0384715_3	UniRef90	UniRef90_A0A1U9WRB4	Single stranded DNA binding protein	NA
UHGV-0384715_3	eggNOG-mapper	59241.E7DND4_BPDP1	NA	NA
UHGV-0384715_3	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0384715_5	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0384715_5	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0384715_5	UniRef90	UniRef90_A0A843FQY1	Toprim domain-containing protein	NA
UHGV-0384715_5	eggNOG-mapper	59241.E7DND2_BPDP1	Toprim-like	NA
UHGV-0384715_5	PADLOC	drt-cluster192	DRT	DRT
UHGV-0384715_5	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0384715_5	Structural annotation	PF13155, PF01807, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0384715_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0384715_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0384715_6	UniRef90	UniRef90_D9ZNG4	Putative replicative DNA helicase	NA
UHGV-0384715_6	eggNOG-mapper	871584.D9ZNG4_9CAUD	DNA helicase activity	NA
UHGV-0384715_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0384715_6	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0384715_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0384715_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0384715_7	eggNOG-mapper	665950.HMPREF1025_01422	Bacterial dnaA protein	NA
UHGV-0384715_7	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0384715_8	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0384715_8	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0384715_8	UniRef90	UniRef90_UPI00057382CF	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0384715_8	eggNOG-mapper	1129192.A0A0E3D9C3_9CAUD	sigma factor activity	NA
UHGV-0384715_8	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0384715_8	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0384715_8	Structural annotation	PF04542, PF13404, MF_00959, TIGR02835, COG1191	NA	NA
UHGV-0384715_9	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0384715_9	eggNOG-mapper	642492.Clole_1831	Helix-turn-helix domain	NA
UHGV-0384715_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0384715_9	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0384715_12	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0384715_12	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0384715_12	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-0384715_12	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-0384715_12	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0384715_12	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0384715_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0384715_12	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0384715_16	eggNOG-mapper	1392486.JIAF01000004_gene1675	NA	NA
UHGV-0384715_16	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0384715_17	PHROG	phrog_3754	NA	unknown function
UHGV-0384715_17	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0384715_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0384715_20	PHROG	phrog_291	endolysin	lysis
UHGV-0384715_20	UniRef90	UniRef90_A0A7X6CVM0	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0384715_20	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0384715_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0384715_20	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0384715_20	Pfam	PF01476	LysM domain	LysM
UHGV-0384715_20	COG	COG1388	LysM repeat	NA
UHGV-0384715_20	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0384715_22	PHROG	phrog_20258	NA	unknown function
UHGV-0384715_22	eggNOG-mapper	1280692.AUJL01000040_gene18	NA	NA
UHGV-0384715_23	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0384715_23	Structural annotation	PF01590, MF_04104, NF041673, COG2203	NA	NA
UHGV-0384715_24	UniRef90	UniRef90_N1ZGW7	Fibronectin type-III domain-containing protein	NA
UHGV-0384715_24	eggNOG-mapper	97138.C820_00743	Fibronectin type 3 domain	NA
UHGV-0384715_24	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0384715_24	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0384715_24	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0384715_25	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0384715_25	UniRef90	UniRef90_UPI00126A7920	phage tail protein	NA
UHGV-0384715_25	eggNOG-mapper	1589751.A0A0C5AEQ0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0384715_25	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0384715_25	Structural annotation	PF12571	NA	NA
UHGV-0384715_26	PHROG	phrog_521	tail protein	tail
UHGV-0384715_26	UniRef90	UniRef90_A0A223D5P7	Phage portal protein	NA
UHGV-0384715_26	eggNOG-mapper	1582156.A0A0A8WFE8_9CAUD	NA	NA
UHGV-0384715_26	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0384715_26	Structural annotation	PF10076, NF001031, COG3778	NA	NA
UHGV-0384715_27	PHROG	phrog_6	baseplate protein	tail
UHGV-0384715_27	UniRef90	UniRef90_H7BWD5	Baseplate_J domain-containing protein	NA
UHGV-0384715_27	eggNOG-mapper	588581.Cpap_2572	Baseplate J-like protein	NA
UHGV-0384715_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0384715_27	COG	COG3299	NA	NA
UHGV-0384715_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0384715_28	PHROG	phrog_120	baseplate protein	tail
UHGV-0384715_28	UniRef90	UniRef90_A0A4P6UWM2	NA	NA
UHGV-0384715_28	eggNOG-mapper	1232443.BAIA02000008_gene656	NA	NA
UHGV-0384715_28	Pfam	PF10934	NA	DUF2634
UHGV-0384715_28	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0384715_28	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0384715_29	PHROG	phrog_24267	NA	unknown function
UHGV-0384715_29	UniRef90	UniRef90_A2F9B0	Gp1-related protein	NA
UHGV-0384715_29	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0384715_29	COG	COG4675	Phage tail collar domain	NA
UHGV-0384715_29	Structural annotation	COG4675	NA	NA
UHGV-0384715_30	PHROG	phrog_24267	NA	unknown function
UHGV-0384715_30	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0384715_30	eggNOG-mapper	469596.HMPREF9488_01321	tail collar domain protein	NA
UHGV-0384715_30	COG	COG4675	Phage tail collar domain	NA
UHGV-0384715_30	Structural annotation	COG4675	NA	NA
UHGV-0384715_31	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0384715_31	COG	COG4675	Phage tail collar domain	NA
UHGV-0384715_31	Structural annotation	COG4675	NA	NA
UHGV-0384715_32	Pfam	PF10844	NA	DUF2577
UHGV-0384715_33	PHROG	phrog_400	tail protein	tail
UHGV-0384715_33	UniRef90	UniRef90_H5XZT6	Phage late control D protein (GPD)	NA
UHGV-0384715_33	eggNOG-mapper	768710.DesyoDRAFT_5201	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0384715_33	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0384715_33	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0384715_34	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0384715_34	PHROG	phrog_380	endolysin	lysis
UHGV-0384715_34	UniRef90	UniRef90_A0A1G6Q5F7	LysM domain-containing protein	NA
UHGV-0384715_34	eggNOG-mapper	1196031.ALEG01000039_gene1900	Lysin motif	NA
UHGV-0384715_34	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0384715_34	Pfam	PF01476	LysM domain	LysM
UHGV-0384715_34	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0384715_34	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0384715_35	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0384715_35	UniRef90	UniRef90_UPI001C126BBD	tape measure protein	NA
UHGV-0384715_35	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0384715_35	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0384715_35	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0384715_35	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0384715_35	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0384715_36	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0384715_36	UniRef90	UniRef90_UPI000C0874F0	XkdN-like protein	NA
UHGV-0384715_36	eggNOG-mapper	1122919.KB905569_gene2950	Phage portal protein	NA
UHGV-0384715_36	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0384715_36	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0384715_37	PHROG	phrog_365	tail protein	tail
UHGV-0384715_37	UniRef90	UniRef90_A0A3A9F5F5	Phage portal protein	NA
UHGV-0384715_37	eggNOG-mapper	445335.CBN_2979	Phage tail tube protein	NA
UHGV-0384715_37	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0384715_37	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0384715_38	PHROG	phrog_279	tail sheath	tail
UHGV-0384715_38	UniRef90	UniRef90_UPI0005E3721C	phage tail sheath family protein	NA
UHGV-0384715_38	eggNOG-mapper	1007103.AFHW01000118_gene1405	Phage tail sheath C-terminal domain	NA
UHGV-0384715_38	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0384715_38	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0384715_38	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0384715_38	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0384715_39	PHROG	phrog_525	NA	unknown function
UHGV-0384715_39	Pfam	PF20765	NA	DUF6838
UHGV-0384715_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0384715_40	UniRef90	UniRef90_UPI00040CDD48	HK97 gp10 family phage protein	NA
UHGV-0384715_40	eggNOG-mapper	1089548.KI783301_gene2612	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0384715_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0384715_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0384715_41	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0384715_41	eggNOG-mapper	796940.HMPREF9628_01302	NA	NA
UHGV-0384715_41	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0384715_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0384715_44	PHROG	phrog_29	major head protein	head and packaging
UHGV-0384715_44	UniRef90	UniRef90_UPI000825CB05	major capsid protein	NA
UHGV-0384715_44	eggNOG-mapper	1262449.CP6013_2085	Phage major capsid protein E	NA
UHGV-0384715_44	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0384715_44	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0384715_45	PHROG	phrog_909	major head protein	head and packaging
UHGV-0384715_45	UniRef90	UniRef90_A0A4D6B5F9	Major capsid protein	NA
UHGV-0384715_45	eggNOG-mapper	764299.STRIC_2137	NA	NA
UHGV-0384715_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0384715_46	UniRef90	UniRef90_UPI001F09E3FF	phage scaffolding protein	NA
UHGV-0384715_46	eggNOG-mapper	568816.Acin_1383	Phage minor structural protein GP20	NA
UHGV-0384715_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0384715_46	Structural annotation	PF06810	NA	NA
UHGV-0384715_47	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0384715_47	UniRef90	UniRef90_A3DI99	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0384715_47	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0384715_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0384715_47	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0384715_47	COG	COG2369	NA	NA
UHGV-0384715_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0384715_48	UniRef90	UniRef90_A0A101H944	Phage portal protein, SPP1 family	NA
UHGV-0384715_48	eggNOG-mapper	445335.CBN_2991	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0384715_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0384715_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0384715_51	Structural annotation	PF13269	NA	NA
UHGV-0384715_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0384715_53	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0384715_53	UniRef90	UniRef90_A0A0J8DBC0	Phage terminase large subunit, PBSX family	NA
UHGV-0384715_53	eggNOG-mapper	268407.PWYN_15645	Terminase RNAseH like domain	NA
UHGV-0384715_53	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0384715_53	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0384715_53	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0384715_53	COG	COG1783	Phage terminase large subunit	NA