UHGV-0384724

Genome information

vOTU vOTU-020723

Genome length 24,100 bps

CDS count 26

Completeness 60.61% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0384724
vOTU ID	vOTU-020723
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4810
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.7
Jumbo phage	No

Genome content
Genome length	24,100 bps
GC content	42.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	93.63%
Average CDS length	871.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0384724_1	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0384724_1	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0384724_1	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0384724_1	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0384724_2	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0384724_2	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0384724_2	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-0384724_2	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0384724_2	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0384724_2	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0384724_2	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0384724_2	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0384724_3	PHROG	phrog_20307	NA	unknown function
UHGV-0384724_3	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0384724_3	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0384724_4	PHROG	phrog_21	portal protein	head and packaging
UHGV-0384724_4	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-0384724_4	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0384724_4	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0384724_4	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0384724_4	COG	COG5511	Phage capsid protein	NA
UHGV-0384724_4	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0384724_5	KOfam	K06904	NA	NA
UHGV-0384724_5	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0384724_5	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-0384724_5	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0384724_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0384724_5	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0384724_5	COG	COG3087	Cell division protein FtsN	NA
UHGV-0384724_5	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0384724_6	PHROG	phrog_122	head decoration	head and packaging
UHGV-0384724_6	UniRef90	UniRef90_A0A443JDB0	NA	NA
UHGV-0384724_6	eggNOG-mapper	1005058.UMN179_02397	NA	NA
UHGV-0384724_6	Pfam	PF09956	NA	DUF2190
UHGV-0384724_6	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0384724_6	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0384724_7	PHROG	phrog_27032	NA	unknown function
UHGV-0384724_7	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0384724_8	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0384724_8	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0384724_8	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0384724_9	PHROG	phrog_17431	NA	unknown function
UHGV-0384724_9	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0384724_9	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0384724_10	PHROG	phrog_290	minor tail protein	tail
UHGV-0384724_10	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0384724_10	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0384724_10	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0384724_10	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0384724_11	PHROG	phrog_27248	NA	unknown function
UHGV-0384724_12	PHROG	phrog_23549	NA	unknown function
UHGV-0384724_12	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0384724_13	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0384724_13	PHROG	phrog_22443	NA	unknown function
UHGV-0384724_13	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-0384724_13	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0384724_13	COG	COG4913	NA	NA
UHGV-0384724_13	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0384724_14	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0384724_15	PHROG	phrog_18	minor tail protein	tail
UHGV-0384724_15	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0384724_15	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0384724_15	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0384724_15	COG	COG4672	Phage tail protein	NA
UHGV-0384724_15	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0384724_16	PHROG	phrog_329	minor tail protein	tail
UHGV-0384724_16	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-0384724_16	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0384724_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0384724_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0384724_16	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0384724_17	KOfam	K06882	NA	NA
UHGV-0384724_17	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0384724_17	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-0384724_17	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0384724_17	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0384724_17	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0384724_17	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0384724_17	COG	COG1511	NA	NA
UHGV-0384724_17	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-0384724_18	PHROG	phrog_1084	NA	unknown function
UHGV-0384724_18	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0384724_19	PHROG	phrog_5132	NA	unknown function
UHGV-0384724_19	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0384724_21	PHROG	phrog_27828	NA	unknown function
UHGV-0384724_21	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0384724_21	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0384724_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0384724_22	PHROG	phrog_435	endolysin	lysis
UHGV-0384724_22	UniRef90	UniRef90_W1WXV6	MurNAc-LAA domain-containing protein	NA
UHGV-0384724_22	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0384724_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0384724_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0384724_22	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0384724_23	PHROG	phrog_18860	NA	unknown function
UHGV-0384724_24	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0384724_24	UniRef90	UniRef90_E1LBK6	HTH_59 domain-containing protein	NA
UHGV-0384724_24	eggNOG-mapper	1128111.HMPREF0870_00986	NA	NA
UHGV-0384724_24	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0384724_25	KOfam	K14059	int; integrase	NA
UHGV-0384724_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0384724_25	UniRef90	UniRef90_A0A096CR61	Tyr recombinase domain-containing protein	NA
UHGV-0384724_25	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0384724_25	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0384724_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0384724_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0384724_25	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0384724_26	eggNOG-mapper	861450.HMPREF0080_02019	NA	NA
UHGV-0384724_26	Structural annotation	PF12007	NA	NA