UHGV-0385346

Genome information

Genome length 30,049 bps

CDS count 35

Completeness 74.61% (medium-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0385346
vOTU ID	vOTU-031046
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_3971
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.69
Jumbo phage	No

Genome content
Genome length	30,049 bps
GC content	30.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	88.54%
Average CDS length	761.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0385346_3	PHROG	phrog_2277	NA	unknown function
UHGV-0385346_3	UniRef90	UniRef90_A0A7U9GKL5	NA	NA
UHGV-0385346_3	eggNOG-mapper	202752.JL53_00870	NA	NA
UHGV-0385346_4	PHROG	phrog_5156	NA	unknown function
UHGV-0385346_4	UniRef90	UniRef90_A0A1C5W2M7	AAA-like domain	NA
UHGV-0385346_4	eggNOG-mapper	536233.CLO_1881	COG0433 Predicted ATPase	NA
UHGV-0385346_4	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0385346_4	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-0385346_8	PHROG	phrog_1455	NA	unknown function
UHGV-0385346_8	eggNOG-mapper	1280692.AUJL01000009_gene2996	NA	NA
UHGV-0385346_8	Pfam	PF21793	NA	DUF6877
UHGV-0385346_9	UniRef90	UniRef90_UPI001897DABE	helix-turn-helix domain-containing protein	NA
UHGV-0385346_9	eggNOG-mapper	547042.BACCOPRO_02161	NA	NA
UHGV-0385346_9	Structural annotation	PF02796, NF040785, COG1710	NA	NA
UHGV-0385346_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0385346_11	PHROG	phrog_291	endolysin	lysis
UHGV-0385346_11	UniRef90	UniRef90_UPI0006915851	peptidoglycan-binding protein	NA
UHGV-0385346_11	eggNOG-mapper	445335.CBN_0828	Glycosyl hydrolases family 25	NA
UHGV-0385346_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0385346_11	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0385346_11	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0385346_11	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0385346_12	PHROG	phrog_1129	holin	lysis
UHGV-0385346_12	UniRef90	UniRef90_UPI0005E8A3FA	phage holin family protein	NA
UHGV-0385346_12	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0385346_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0385346_12	Structural annotation	PF06946	NA	NA
UHGV-0385346_13	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0385346_13	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0385346_13	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0385346_13	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0385346_13	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0385346_14	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0385346_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0385346_14	UniRef90	UniRef90_A0A1I3QGX8	Integrase/recombinase XerD	NA
UHGV-0385346_14	eggNOG-mapper	632245.CLP_2897	Belongs to the 'phage' integrase family	NA
UHGV-0385346_14	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0385346_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0385346_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0385346_14	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0385346_15	KOfam	K01186	NEU1; sialidase-1 [EC:3.2.1.18]	NA
UHGV-0385346_15	UniRef90	UniRef90_A0A7Y9BDV9	Exo-alpha-sialidase	NA
UHGV-0385346_15	Pfam	PF13088	BNR repeat-like domain	BNR_2
UHGV-0385346_17	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0385346_17	PHROG	phrog_13289	tail protein	tail
UHGV-0385346_17	UniRef90	UniRef90_A0A143Y1L9	Prophage_tail domain-containing protein	NA
UHGV-0385346_17	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-0385346_17	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0385346_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0385346_17	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0385346_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0385346_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0385346_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0385346_18	UniRef90	UniRef90_A0A1C5YVW7	Phage-related protein	NA
UHGV-0385346_18	eggNOG-mapper	1151292.QEW_4524	tail component	NA
UHGV-0385346_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0385346_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0385346_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0385346_19	eggNOG-mapper	1414720.CBYM010000001_gene707	tail tape measure protein	NA
UHGV-0385346_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0385346_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0385346_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0385346_20	PHROG	phrog_4704	tail length tape measure protein	tail
UHGV-0385346_20	UniRef90	UniRef90_A0A1G9TYM9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0385346_20	eggNOG-mapper	748727.CLJU_c31220	phage tail tape measure protein	NA
UHGV-0385346_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0385346_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0385346_22	PHROG	phrog_6280	NA	unknown function
UHGV-0385346_22	UniRef90	UniRef90_UPI001C800AF1	esterase	NA
UHGV-0385346_22	eggNOG-mapper	1196322.A370_04058	NA	NA
UHGV-0385346_23	PHROG	phrog_6686	tail tube protein	tail
UHGV-0385346_23	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0385346_23	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0385346_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0385346_24	PHROG	phrog_7585	NA	unknown function
UHGV-0385346_24	eggNOG-mapper	1443122.Z958_05865	NA	NA
UHGV-0385346_24	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0385346_25	eggNOG-mapper	559189.B6SBT4_9CAUD	NA	NA
UHGV-0385346_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0385346_26	PHROG	phrog_8435	NA	unknown function
UHGV-0385346_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0385346_27	PHROG	phrog_4020	NA	unknown function
UHGV-0385346_27	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0385346_28	PHROG	phrog_544	major head protein	head and packaging
UHGV-0385346_28	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0385346_28	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0385346_28	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0385346_28	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0385346_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0385346_29	UniRef90	UniRef90_UPI000360E95E	phage scaffolding protein	NA
UHGV-0385346_29	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0385346_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0385346_29	Structural annotation	PF06810	NA	NA
UHGV-0385346_30	PHROG	phrog_21401	pilot protein for DNA ejection	tail
UHGV-0385346_30	UniRef90	UniRef90_A0A1C5YWY9	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0385346_30	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0385346_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0385346_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0385346_31	UniRef90	UniRef90_UPI0008DAB247	phage portal protein	NA
UHGV-0385346_31	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0385346_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0385346_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0385346_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0385346_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0385346_32	UniRef90	UniRef90_UPI001D0FBF10	PBSX family phage terminase large subunit	NA
UHGV-0385346_32	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0385346_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0385346_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0385346_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0385346_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0385346_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0385346_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0385346_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0385346_34	UniRef90	UniRef90_A0A165QBQ8	Methyltransferase	NA
UHGV-0385346_34	eggNOG-mapper	44251.PDUR_04660	DNA methylase	NA
UHGV-0385346_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0385346_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0385346_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0385346_34	COG	COG0863	DNA modification methylase	NA
UHGV-0385346_34	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0385346_35	PHROG	phrog_9079	NA	unknown function
UHGV-0385346_35	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0385346_35	Structural annotation	TIGR04550	NA	NA