UHGV-0386294

Genome information

Genome length 21,718 bps

CDS count 26

Completeness 61.73% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0386294
vOTU ID	vOTU-032732
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_5325
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.39
Jumbo phage	No

Genome content
Genome length	21,718 bps
GC content	39.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	93.54%
Average CDS length	783.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0386294_2	eggNOG-mapper	1232447.BAHW02000014_gene830	NA	NA
UHGV-0386294_3	KOfam	K14059	int; integrase	NA
UHGV-0386294_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0386294_3	UniRef90	UniRef90_A0A374MXE7	Tyr recombinase domain-containing protein	NA
UHGV-0386294_3	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0386294_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0386294_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0386294_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0386294_7	UniRef90	UniRef90_A0A412ULX9	XRE family transcriptional regulator	NA
UHGV-0386294_7	eggNOG-mapper	679200.HMPREF9333_02253	Helix-turn-helix XRE-family like proteins	NA
UHGV-0386294_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0386294_7	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0386294_7	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0386294_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0386294_8	PHROG	phrog_20388	endolysin	lysis
UHGV-0386294_8	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0386294_8	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0386294_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0386294_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0386294_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0386294_8	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0386294_9	PHROG	phrog_881	holin	lysis
UHGV-0386294_9	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0386294_9	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0386294_9	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0386294_9	Structural annotation	PF16938	NA	NA
UHGV-0386294_10	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0386294_10	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0386294_12	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0386294_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0386294_13	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0386294_13	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0386294_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0386294_13	COG	COG1511	NA	NA
UHGV-0386294_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0386294_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0386294_14	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0386294_14	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0386294_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0386294_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0386294_15	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0386294_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0386294_15	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0386294_15	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0386294_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0386294_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0386294_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0386294_16	Structural annotation	PF11836	NA	NA
UHGV-0386294_17	PHROG	phrog_88	major tail protein	tail
UHGV-0386294_17	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0386294_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0386294_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0386294_18	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0386294_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0386294_18	Structural annotation	TIGR01725	NA	NA
UHGV-0386294_19	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0386294_19	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0386294_20	PHROG	phrog_19734	NA	unknown function
UHGV-0386294_20	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0386294_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0386294_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0386294_21	PHROG	phrog_749	NA	unknown function
UHGV-0386294_21	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0386294_21	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0386294_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0386294_22	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0386294_22	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0386294_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0386294_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0386294_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0386294_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0386294_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0386294_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0386294_23	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0386294_23	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0386294_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0386294_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0386294_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0386294_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0386294_24	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0386294_24	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0386294_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0386294_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0386294_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0386294_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0386294_25	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0386294_25	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0386294_25	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-0386294_25	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0386294_25	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0386294_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0386294_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0386294_25	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0386294_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0386294_26	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0386294_26	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0386294_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0386294_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0386294_26	Structural annotation	PF20441, MF_04147, TIGR01547, COG4626	NA	NA