UHGV-0386511

Genome information

Genome length 39,834 bps

CDS count 46

Completeness 98.97% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0386511
vOTU ID	vOTU-070268
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2261
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.58
Jumbo phage	No

Genome content
Genome length	39,834 bps
GC content	42.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.23%
Average CDS length	820.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0386511_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0386511_1	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-0386511_1	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0386511_1	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0386511_2	PHROG	phrog_236	nucleotide kinase	other
UHGV-0386511_2	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-0386511_2	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0386511_2	Pfam	PF11753	NA	DUF3310
UHGV-0386511_2	Structural annotation	PF11753	NA	NA
UHGV-0386511_3	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0386511_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0386511_3	UniRef90	UniRef90_A0A6N2ZEW6	Helicase ATP-binding domain-containing protein	NA
UHGV-0386511_3	eggNOG-mapper	546273.VEIDISOL_00706	SNF2 family	NA
UHGV-0386511_3	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0386511_3	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0386511_3	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0386511_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0386511_3	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0386511_5	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0386511_5	UniRef90	UniRef90_C4FP80	Virulence-associated protein E	NA
UHGV-0386511_5	eggNOG-mapper	546273.VEIDISOL_00704	Virulence-associated protein E	NA
UHGV-0386511_5	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0386511_5	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0386511_5	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0386511_6	PHROG	phrog_16315	NA	unknown function
UHGV-0386511_6	UniRef90	UniRef90_UPI000F8DF173	PcfJ domain-containing protein	NA
UHGV-0386511_6	eggNOG-mapper	546273.VEIDISOL_00703	PcfJ-like protein	NA
UHGV-0386511_6	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0386511_6	Structural annotation	PF14284	NA	NA
UHGV-0386511_8	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0386511_8	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0386511_8	UniRef90	UniRef90_A0A3A6W420	POLAc domain-containing protein	NA
UHGV-0386511_8	eggNOG-mapper	546273.VEIDISOL_00701	DNA polymerase	NA
UHGV-0386511_8	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0386511_8	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0386511_8	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0386511_9	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0386511_9	UniRef90	UniRef90_UPI001F0CBF89	NA	NA
UHGV-0386511_9	eggNOG-mapper	546273.VEIDISOL_00700	NA	NA
UHGV-0386511_9	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0386511_9	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0386511_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0386511_11	UniRef90	UniRef90_UPI000F8EBC86	NA	NA
UHGV-0386511_11	eggNOG-mapper	546273.VEIDISOL_00698	NA	NA
UHGV-0386511_11	Pfam	PF10926	NA	DUF2800
UHGV-0386511_11	COG	COG2887	RecB family exonuclease	NA
UHGV-0386511_11	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0386511_13	PHROG	phrog_30876	NA	unknown function
UHGV-0386511_13	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-0386511_14	PHROG	phrog_29542	NA	unknown function
UHGV-0386511_15	PHROG	phrog_31038	NA	unknown function
UHGV-0386511_16	PHROG	phrog_6058	NA	unknown function
UHGV-0386511_16	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0386511_17	UniRef90	UniRef90_A0A2S7YZG3	DNA-binding protein	NA
UHGV-0386511_17	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0386511_17	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0386511_18	UniRef90	UniRef90_UPI00068C50D9	transcriptional regulator	NA
UHGV-0386511_18	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-0386511_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0386511_18	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0386511_19	PHROG	phrog_1914	NA	unknown function
UHGV-0386511_19	UniRef90	UniRef90_A0A496P8T2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0386511_19	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0386511_19	COG	COG1592	Rubrerythrin	NA
UHGV-0386511_20	UniRef90	UniRef90_A0A1M6P9T6	zinc_ribbon_2 domain-containing protein	NA
UHGV-0386511_21	KOfam	K14059	int; integrase	NA
UHGV-0386511_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0386511_21	UniRef90	UniRef90_F5KZK3	Site-specific recombinase, phage integrase family	NA
UHGV-0386511_21	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0386511_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0386511_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0386511_21	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0386511_23	PHROG	phrog_18860	NA	unknown function
UHGV-0386511_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0386511_24	PHROG	phrog_435	endolysin	lysis
UHGV-0386511_24	UniRef90	UniRef90_A0A2S7ZCP6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0386511_24	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0386511_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0386511_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0386511_24	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0386511_25	PHROG	phrog_27828	NA	unknown function
UHGV-0386511_25	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0386511_25	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0386511_27	PHROG	phrog_22483	NA	unknown function
UHGV-0386511_27	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0386511_27	eggNOG-mapper	706434.HMPREF9429_00509	NA	NA
UHGV-0386511_27	Structural annotation	PF17936, NF033814	NA	NA
UHGV-0386511_28	PHROG	phrog_1084	NA	unknown function
UHGV-0386511_28	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0386511_29	PHROG	phrog_25213	NA	unknown function
UHGV-0386511_30	PHROG	phrog_2427	NA	unknown function
UHGV-0386511_31	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0386511_31	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0386511_31	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0386511_31	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0386511_31	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0386511_31	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0386511_31	COG	COG1511	NA	NA
UHGV-0386511_31	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0386511_32	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0386511_32	PHROG	phrog_329	minor tail protein	tail
UHGV-0386511_32	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-0386511_32	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0386511_32	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0386511_32	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0386511_32	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0386511_33	PHROG	phrog_18	minor tail protein	tail
UHGV-0386511_33	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0386511_33	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0386511_33	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0386511_33	COG	COG4672	Phage tail protein	NA
UHGV-0386511_33	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0386511_34	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0386511_34	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0386511_35	PHROG	phrog_22443	NA	unknown function
UHGV-0386511_35	UniRef90	UniRef90_F5KZN7	Phage tail tape measure protein, lambda family	NA
UHGV-0386511_35	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0386511_35	COG	COG4913	NA	NA
UHGV-0386511_35	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0386511_36	PHROG	phrog_27248	NA	unknown function
UHGV-0386511_37	PHROG	phrog_290	minor tail protein	tail
UHGV-0386511_37	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0386511_37	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0386511_37	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0386511_37	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0386511_38	PHROG	phrog_17431	NA	unknown function
UHGV-0386511_38	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0386511_38	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0386511_39	PHROG	phrog_222	tail protein	tail
UHGV-0386511_39	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0386511_39	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0386511_39	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0386511_40	PHROG	phrog_27032	NA	unknown function
UHGV-0386511_40	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0386511_41	PHROG	phrog_122	head decoration	head and packaging
UHGV-0386511_41	UniRef90	UniRef90_UPI0007C895B4	NA	NA
UHGV-0386511_41	eggNOG-mapper	484770.UFO1_2460	NA	NA
UHGV-0386511_41	Pfam	PF09956	NA	DUF2190
UHGV-0386511_41	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0386511_41	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0386511_42	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0386511_42	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-0386511_42	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0386511_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0386511_42	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0386511_42	COG	COG3087	Cell division protein FtsN	NA
UHGV-0386511_42	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0386511_43	PHROG	phrog_21	portal protein	head and packaging
UHGV-0386511_43	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-0386511_43	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0386511_43	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0386511_43	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0386511_43	COG	COG5511	Phage capsid protein	NA
UHGV-0386511_43	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0386511_44	PHROG	phrog_20307	NA	unknown function
UHGV-0386511_44	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0386511_44	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0386511_45	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0386511_45	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0386511_45	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-0386511_45	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0386511_45	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0386511_45	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0386511_45	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0386511_45	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0386511_45	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0386511_46	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0386511_46	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0386511_46	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0386511_46	Structural annotation	PF07471, COG4220	NA	NA