UHGV-0386622

Genome information

Genome length 18,276 bps

CDS count 24

Completeness 54.03% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0386622
vOTU ID	vOTU-032736
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_6187
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.97
Jumbo phage	No

Genome content
Genome length	18,276 bps
GC content	39.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	95.83%
Average CDS length	734.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0386622_1	KOfam	K03071	secB; preprotein translocase subunit SecB	NA
UHGV-0386622_1	PHROG	phrog_21664	NA	unknown function
UHGV-0386622_1	UniRef90	UniRef90_UPI000408D9FC	protein-export chaperone SecB	NA
UHGV-0386622_1	eggNOG-mapper	1280689.AUJC01000016_gene85	protein tetramerization	NA
UHGV-0386622_1	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0386622_1	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-0386622_1	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-0386622_2	PHROG	phrog_2339	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0386622_2	UniRef90	UniRef90_A0A1G5XTR2	Helix-turn-helix	NA
UHGV-0386622_2	eggNOG-mapper	1410625.JHWK01000002_gene391	Helix-turn-helix XRE-family like proteins	NA
UHGV-0386622_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0386622_2	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0386622_3	PHROG	phrog_2523	NA	unknown function
UHGV-0386622_3	Structural annotation	PF05973, TIGR02683, COG3657	NA	NA
UHGV-0386622_4	PHROG	phrog_1129	holin	lysis
UHGV-0386622_4	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0386622_4	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0386622_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0386622_4	Structural annotation	PF16079	NA	NA
UHGV-0386622_6	KOfam	K07273	acm; lysozyme	NA
UHGV-0386622_6	PHROG	phrog_291	endolysin	lysis
UHGV-0386622_6	UniRef90	UniRef90_A0A416S3Y6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0386622_6	eggNOG-mapper	411460.RUMTOR_02294	Lysin motif	NA
UHGV-0386622_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0386622_6	Pfam	PF00570	HRDC domain	HRDC
UHGV-0386622_6	Pfam	PF01476	LysM domain	LysM
UHGV-0386622_6	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0386622_6	COG	COG1388	LysM repeat	NA
UHGV-0386622_6	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0386622_8	PHROG	phrog_24267	NA	unknown function
UHGV-0386622_8	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0386622_8	eggNOG-mapper	411468.CLOSCI_00188	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0386622_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0386622_8	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0386622_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0386622_9	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0386622_9	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0386622_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0386622_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0386622_9	COG	COG4926	Phage-related protein	NA
UHGV-0386622_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0386622_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0386622_10	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0386622_10	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0386622_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0386622_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0386622_11	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0386622_11	UniRef90	UniRef90_UPI000C7C3162	phage tail tape measure protein	NA
UHGV-0386622_11	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0386622_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0386622_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0386622_11	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0386622_12	PHROG	phrog_3033	NA	unknown function
UHGV-0386622_12	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-0386622_12	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0386622_13	PHROG	phrog_709	NA	unknown function
UHGV-0386622_13	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0386622_13	Structural annotation	PF11836	NA	NA
UHGV-0386622_14	PHROG	phrog_88	major tail protein	tail
UHGV-0386622_14	UniRef90	UniRef90_R9N908	Phi13 family phage major tail protein	NA
UHGV-0386622_14	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-0386622_14	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0386622_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0386622_14	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0386622_15	PHROG	phrog_78	tail terminator	connector
UHGV-0386622_15	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0386622_15	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0386622_15	Structural annotation	PF20765	NA	NA
UHGV-0386622_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0386622_16	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0386622_16	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0386622_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0386622_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0386622_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0386622_17	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0386622_17	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0386622_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0386622_18	PHROG	phrog_2550	NA	unknown function
UHGV-0386622_18	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0386622_18	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0386622_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0386622_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0386622_19	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0386622_19	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0386622_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0386622_19	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0386622_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0386622_19	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0386622_20	KOfam	K06904	NA	NA
UHGV-0386622_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0386622_20	UniRef90	UniRef90_A0A134AET7	Phage prohead protease, HK97 family	NA
UHGV-0386622_20	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0386622_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0386622_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0386622_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0386622_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0386622_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0386622_21	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0386622_21	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0386622_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0386622_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0386622_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0386622_21	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0386622_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0386622_22	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0386622_22	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0386622_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0386622_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0386622_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0386622_22	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0386622_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0386622_23	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0386622_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0386622_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0386622_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA