UHGV-0387359

Genome information

vOTU vOTU-020161

Genome length 28,872 bps

CDS count 29

Completeness 65.98% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0387359
vOTU ID	vOTU-020161
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4127
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.31
Jumbo phage	No

Genome content
Genome length	28,872 bps
GC content	30.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	93.28%
Average CDS length	930.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0387359_1	UniRef90	UniRef90_UPI000DD04C40	helix-turn-helix domain-containing protein	NA
UHGV-0387359_1	eggNOG-mapper	1280689.AUJC01000024_gene150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0387359_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0387359_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0387359_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0387359_2	UniRef90	UniRef90_UPI00189BD721	recombinase family protein	NA
UHGV-0387359_2	eggNOG-mapper	1151292.QEW_4366	Resolvase, N terminal domain	NA
UHGV-0387359_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0387359_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0387359_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0387359_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0387359_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0387359_3	PHROG	phrog_38798	NA	unknown function
UHGV-0387359_3	UniRef90	UniRef90_T3D4A8	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB domain protein	NA
UHGV-0387359_3	eggNOG-mapper	1292035.H476_0669	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0387359_3	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0387359_4	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0387359_4	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0387359_4	UniRef90	UniRef90_A0A267MQD1	FtsK domain-containing protein	NA
UHGV-0387359_4	eggNOG-mapper	1463900.JOIX01000030_gene4772	NA	NA
UHGV-0387359_4	PADLOC	SspH_00004	SspH	SSP
UHGV-0387359_4	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0387359_4	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0387359_5	PHROG	phrog_9996	NA	unknown function
UHGV-0387359_5	UniRef90	UniRef90_UPI0011071500	replication-relaxation family protein	NA
UHGV-0387359_5	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0387359_5	Structural annotation	PF13814, MF_01819, NF041423, COG1733	NA	NA
UHGV-0387359_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0387359_6	PHROG	phrog_435	endolysin	lysis
UHGV-0387359_6	UniRef90	UniRef90_UPI0018A97EC2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387359_6	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0387359_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0387359_6	Pfam	PF19087	NA	DUF5776
UHGV-0387359_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387359_6	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0387359_7	PHROG	phrog_1129	holin	lysis
UHGV-0387359_7	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-0387359_7	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0387359_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0387359_7	Structural annotation	PF06946	NA	NA
UHGV-0387359_8	PHROG	phrog_1863	NA	unknown function
UHGV-0387359_8	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0387359_8	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0387359_9	UniRef90	UniRef90_A0A542AKB6	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0387359_9	eggNOG-mapper	1105031.HMPREF1141_0490	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0387359_9	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0387359_9	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0387359_10	KOfam	K07485	K07485; transposase	NA
UHGV-0387359_10	PHROG	phrog_5749	transposase	integration and excision
UHGV-0387359_10	UniRef90	UniRef90_A0A0A8WEF4	Transposase	NA
UHGV-0387359_10	eggNOG-mapper	1582152.A0A0A8WEF4_9CAUD	Helix-turn-helix domain of transposase family ISL3	NA
UHGV-0387359_10	Pfam	PF14690	zinc-finger of transposase IS204/IS1001/IS1096/IS1165	zf-ISL3
UHGV-0387359_10	Pfam	PF13542	Helix-turn-helix domain of transposase family ISL3	HTH_Tnp_ISL3
UHGV-0387359_10	Pfam	PF01610	Transposase	DDE_Tnp_ISL3
UHGV-0387359_10	NCBIFam	NF033550.5	ISL3 family transposase	NA
UHGV-0387359_10	Structural annotation	PF01610, PF20020, NF033550, COG3464	NA	NA
UHGV-0387359_12	PHROG	phrog_1048	NA	unknown function
UHGV-0387359_12	UniRef90	UniRef90_A0A374AMV7	NA	NA
UHGV-0387359_12	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0387359_12	Pfam	PF11195	NA	DUF2829
UHGV-0387359_12	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0387359_12	Structural annotation	PF11195	NA	NA
UHGV-0387359_14	eggNOG-mapper	1444310.JANV01000096_gene3278	NA	NA
UHGV-0387359_15	PHROG	phrog_16573	NA	unknown function
UHGV-0387359_15	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0387359_15	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0387359_16	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0387359_16	PHROG	phrog_7043	tail protein	tail
UHGV-0387359_16	UniRef90	UniRef90_UPI0018AA7BAA	SH3 domain-containing protein	NA
UHGV-0387359_16	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0387359_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0387359_16	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0387359_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0387359_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0387359_16	COG	COG4926	Phage-related protein	NA
UHGV-0387359_16	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0387359_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0387359_17	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0387359_17	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0387359_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0387359_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0387359_18	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0387359_18	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0387359_18	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0387359_18	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0387359_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0387359_18	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0387359_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0387359_19	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0387359_20	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0387359_20	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0387359_20	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0387359_21	PHROG	phrog_5509	neck protein	connector
UHGV-0387359_21	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-0387359_21	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0387359_22	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0387359_23	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0387359_23	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0387359_23	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0387359_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0387359_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0387359_24	PHROG	phrog_749	NA	unknown function
UHGV-0387359_24	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0387359_24	eggNOG-mapper	1121866.AUGK01000006_gene881	NA	NA
UHGV-0387359_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0387359_25	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0387359_25	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0387359_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0387359_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0387359_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0387359_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0387359_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0387359_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0387359_26	UniRef90	UniRef90_UPI00110724D9	Clp protease ClpP	NA
UHGV-0387359_26	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0387359_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0387359_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0387359_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0387359_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0387359_27	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0387359_27	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0387359_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0387359_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0387359_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0387359_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0387359_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0387359_28	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0387359_28	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0387359_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0387359_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0387359_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0387359_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0387359_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0387359_29	UniRef90	UniRef90_UPI001E64C17F	P27 family phage terminase small subunit	NA
UHGV-0387359_29	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0387359_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0387359_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA