UHGV-0387688

Genome information

vOTU vOTU-052040

Genome length 40,219 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0387688
vOTU ID	vOTU-052040
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2162
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.65
Jumbo phage	No

Genome content
Genome length	40,219 bps
GC content	48.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.71%
Average CDS length	682.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0387688_1	PHROG	phrog_19280	NA	unknown function
UHGV-0387688_1	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0387688_1	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0387688_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0387688_4	PHROG	phrog_30220	NA	unknown function
UHGV-0387688_4	eggNOG-mapper	696281.Desru_1098	ATPase involved in DNA repair	NA
UHGV-0387688_4	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0387688_5	PHROG	phrog_18725	NA	unknown function
UHGV-0387688_5	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0387688_6	PHROG	phrog_13879	NA	unknown function
UHGV-0387688_6	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0387688_6	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0387688_7	PHROG	phrog_1194	NA	unknown function
UHGV-0387688_7	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0387688_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0387688_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0387688_8	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0387688_8	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0387688_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0387688_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0387688_9	PHROG	phrog_8355	NA	unknown function
UHGV-0387688_9	UniRef90	UniRef90_A0A1I0K8W5	Bacteriophage Gp15 protein	NA
UHGV-0387688_9	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0387688_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0387688_9	Structural annotation	PF06854	NA	NA
UHGV-0387688_10	PHROG	phrog_8300	NA	unknown function
UHGV-0387688_10	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0387688_10	Structural annotation	PF06854	NA	NA
UHGV-0387688_11	PHROG	phrog_820	major tail protein	tail
UHGV-0387688_11	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0387688_11	COG	COG5492	NA	NA
UHGV-0387688_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0387688_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0387688_12	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0387688_12	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0387688_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0387688_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0387688_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0387688_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0387688_14	PHROG	phrog_8710	NA	unknown function
UHGV-0387688_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0387688_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0387688_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0387688_15	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0387688_16	PHROG	phrog_1378	NA	unknown function
UHGV-0387688_16	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0387688_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0387688_17	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0387688_17	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0387688_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0387688_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0387688_18	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0387688_19	PHROG	phrog_3675	NA	unknown function
UHGV-0387688_19	UniRef90	UniRef90_A0A3E2UCU7	Dihydrolipoyl dehydrogenase	NA
UHGV-0387688_19	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0387688_19	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0387688_19	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0387688_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0387688_21	UniRef90	UniRef90_UPI001106A636	minor capsid protein	NA
UHGV-0387688_21	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0387688_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0387688_21	COG	COG2369	NA	NA
UHGV-0387688_21	Structural annotation	PF06152	NA	NA
UHGV-0387688_22	PHROG	phrog_25639	NA	unknown function
UHGV-0387688_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0387688_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0387688_23	UniRef90	UniRef90_A0A174WUZ7	Phage minor capsid protein	NA
UHGV-0387688_23	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0387688_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0387688_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0387688_24	UniRef90	UniRef90_L0P6F5	HNH endonuclease	NA
UHGV-0387688_24	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0387688_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0387688_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0387688_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0387688_24	Structural annotation	PF07463	NA	NA
UHGV-0387688_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0387688_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0387688_25	UniRef90	UniRef90_A0A174WYX0	Phage terminase, large subunit	NA
UHGV-0387688_25	eggNOG-mapper	1298920.KI911353_gene4856	Phage terminase, large subunit, PBSX family	NA
UHGV-0387688_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0387688_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0387688_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0387688_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0387688_26	UniRef90	UniRef90_A0A374P9L2	Terminase small subunit	NA
UHGV-0387688_26	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0387688_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0387688_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0387688_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0387688_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0387688_27	eggNOG-mapper	1304866.K413DRAFT_0819	NA	NA
UHGV-0387688_28	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0387688_28	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0387688_28	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0387688_29	PHROG	phrog_25231	NA	unknown function
UHGV-0387688_32	Structural annotation	PF11331, TIGR02098	NA	NA
UHGV-0387688_33	Structural annotation	PF16535, NF011863	NA	NA
UHGV-0387688_34	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0387688_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0387688_34	UniRef90	UniRef90_A0A174X759	DNA/RNA helicase, superfamily II, SNF2 family	NA
UHGV-0387688_34	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0387688_34	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0387688_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0387688_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0387688_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0387688_34	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0387688_35	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0387688_35	UniRef90	UniRef90_A0A174XGF2	VRR-NUC domain-containing protein	NA
UHGV-0387688_35	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0387688_36	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0387688_36	UniRef90	UniRef90_A0A174X6U4	Putative P-loop ATPase	NA
UHGV-0387688_36	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0387688_36	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0387688_36	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0387688_36	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0387688_37	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0387688_37	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0387688_37	UniRef90	UniRef90_A0A174XFA1	DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains	NA
UHGV-0387688_37	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0387688_37	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0387688_37	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0387688_37	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0387688_38	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0387688_38	UniRef90	UniRef90_A0A3E2VQQ5	NA	NA
UHGV-0387688_38	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0387688_38	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0387688_38	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0387688_41	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0387688_41	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0387688_41	UniRef90	UniRef90_UPI00189C4093	NA	NA
UHGV-0387688_41	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0387688_41	Pfam	PF10926	NA	DUF2800
UHGV-0387688_41	COG	COG2887	RecB family exonuclease	NA
UHGV-0387688_41	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0387688_42	PHROG	phrog_22695	NA	unknown function
UHGV-0387688_42	eggNOG-mapper	1120746.CCNL01000014_gene2206	NA	NA
UHGV-0387688_43	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0387688_43	UniRef90	UniRef90_A0A174X6P5	Bacterial seryl-tRNA synthetase related	NA
UHGV-0387688_43	eggNOG-mapper	411902.CLOBOL_02549	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0387688_43	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0387688_43	COG	COG4443	NA	NA
UHGV-0387688_43	Structural annotation	COG4443	NA	NA
UHGV-0387688_46	UniRef90	UniRef90_UPI000E4507CD	DNA-binding protein	NA
UHGV-0387688_46	eggNOG-mapper	411902.CLOBOL_02554	NA	NA
UHGV-0387688_46	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0387688_47	UniRef90	UniRef90_UPI000E4529C8	helix-turn-helix domain-containing protein	NA
UHGV-0387688_47	eggNOG-mapper	411902.CLOBOL_02555	COG COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0387688_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0387688_47	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0387688_48	PHROG	phrog_1914	NA	unknown function
UHGV-0387688_48	UniRef90	UniRef90_A0A413LUE8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0387688_48	eggNOG-mapper	1232447.BAHW02000005_gene148	IrrE N-terminal-like domain	NA
UHGV-0387688_48	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0387688_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0387688_49	UniRef90	UniRef90_A0A3A6GQZ1	Zinc ribbon domain-containing protein	NA
UHGV-0387688_49	eggNOG-mapper	1499689.CCNN01000007_gene1692	TM2 domain	NA
UHGV-0387688_49	COG	COG2314	NA	NA
UHGV-0387688_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0387688_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0387688_50	UniRef90	UniRef90_D3AJD3	Resolvase, N-terminal domain protein	NA
UHGV-0387688_50	eggNOG-mapper	1163671.JAGI01000001_gene335	Resolvase, N terminal domain	NA
UHGV-0387688_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0387688_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0387688_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0387688_50	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0387688_51	UniRef90	UniRef90_A0A413LDX4	GNAT family acetyltransferase	NA
UHGV-0387688_52	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0387688_52	PHROG	phrog_3088	amidase	lysis
UHGV-0387688_52	UniRef90	UniRef90_A0A174XN03	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387688_52	eggNOG-mapper	1151292.QEW_0991	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0387688_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0387688_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387688_52	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0387688_53	PHROG	phrog_199	holin	lysis
UHGV-0387688_53	UniRef90	UniRef90_D3AUA6	Toxin secretion/phage lysis holin	NA
UHGV-0387688_53	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-0387688_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0387688_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0387688_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0387688_54	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0387688_55	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA