UHGV-0387795

Genome information

Genome length 22,048 bps

CDS count 22

Completeness 52.75% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0387795
vOTU ID	vOTU-032109
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_5253
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.68
Jumbo phage	No

Genome content
Genome length	22,048 bps
GC content	37.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	92.53%
Average CDS length	930.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0387795_1	PHROG	phrog_87	metallo-protease	other
UHGV-0387795_1	UniRef90	UniRef90_A0A084JI98	Peptidase_M78 domain-containing protein	NA
UHGV-0387795_1	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-0387795_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0387795_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0387795_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0387795_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0387795_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0387795_2	UniRef90	UniRef90_A0A6P1YGP1	Recombinase family protein	NA
UHGV-0387795_2	eggNOG-mapper	1415774.U728_477	Resolvase, N terminal domain	NA
UHGV-0387795_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0387795_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0387795_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0387795_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0387795_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0387795_3	eggNOG-mapper	742740.HMPREF9474_04007	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0387795_3	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0387795_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0387795_4	PHROG	phrog_7	endolysin	lysis
UHGV-0387795_4	UniRef90	UniRef90_D4MWZ1	Lysozyme	NA
UHGV-0387795_4	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0387795_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0387795_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0387795_4	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0387795_4	HAMAP	MF_04110	Endolysin	NA
UHGV-0387795_4	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0387795_5	PHROG	phrog_15303	NA	unknown function
UHGV-0387795_5	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-0387795_6	PHROG	phrog_937	hemolysin	other
UHGV-0387795_6	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0387795_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0387795_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0387795_7	UniRef90	UniRef90_A0A415YBZ1	Integrase	NA
UHGV-0387795_7	eggNOG-mapper	1291050.JAGE01000001_gene2947	Belongs to the 'phage' integrase family	NA
UHGV-0387795_7	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0387795_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0387795_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0387795_7	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0387795_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-0387795_8	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0387795_8	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0387795_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0387795_9	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0387795_9	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0387795_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0387795_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0387795_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0387795_10	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0387795_10	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0387795_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0387795_10	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0387795_11	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0387795_11	PHROG	phrog_5218	NA	unknown function
UHGV-0387795_11	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-0387795_11	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0387795_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0387795_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0387795_13	PHROG	phrog_88	major tail protein	tail
UHGV-0387795_13	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0387795_13	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0387795_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0387795_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0387795_14	Structural annotation	PF05657	NA	NA
UHGV-0387795_15	Structural annotation	TIGR01725	NA	NA
UHGV-0387795_16	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0387795_16	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0387795_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0387795_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0387795_17	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0387795_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0387795_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0387795_18	UniRef90	UniRef90_A0A415G894	Phage major capsid protein	NA
UHGV-0387795_18	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0387795_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0387795_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0387795_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0387795_18	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0387795_19	KOfam	K06904	NA	NA
UHGV-0387795_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0387795_19	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-0387795_19	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0387795_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0387795_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0387795_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0387795_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0387795_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0387795_20	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0387795_20	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0387795_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0387795_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0387795_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0387795_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0387795_21	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-0387795_21	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0387795_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0387795_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0387795_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0387795_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA