UHGV-0387863

Genome information

vOTU vOTU-052056

Genome length 39,915 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9621

Prediction confidence Confident

Genome information
Genome ID	UHGV-0387863
vOTU ID	vOTU-052056
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2231
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9621
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.9
Jumbo phage	No

Genome content
Genome length	39,915 bps
GC content	42.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.89%
Average CDS length	655.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0387863_1	PHROG	phrog_888	NA	unknown function
UHGV-0387863_1	UniRef90	UniRef90_UPI001C380275	SHOCT domain-containing protein	NA
UHGV-0387863_1	eggNOG-mapper	877415.JNJQ01000019_gene1782	NA	NA
UHGV-0387863_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0387863_1	Structural annotation	PF05120	NA	NA
UHGV-0387863_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0387863_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0387863_2	UniRef90	UniRef90_UPI00189F9D33	recombinase family protein	NA
UHGV-0387863_2	eggNOG-mapper	999413.HMPREF1094_00247	Recombinase	NA
UHGV-0387863_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0387863_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0387863_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0387863_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0387863_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0387863_3	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0387863_3	UniRef90	UniRef90_UPI001D15372C	Abi family protein	NA
UHGV-0387863_3	eggNOG-mapper	428127.EUBDOL_02200	Abi-like protein	NA
UHGV-0387863_3	PADLOC	AbiD	AbiD	Abi
UHGV-0387863_3	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0387863_3	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0387863_3	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0387863_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0387863_4	PHROG	phrog_670	endolysin	lysis
UHGV-0387863_4	UniRef90	UniRef90_N9VAY7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0387863_4	eggNOG-mapper	999413.HMPREF1094_00201	Ami_2	NA
UHGV-0387863_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0387863_4	COG	COG3942	Surface antigen	NA
UHGV-0387863_4	Structural annotation	PF01510, PF16775, MF_04111, COG5632	NA	NA
UHGV-0387863_5	PHROG	phrog_4105	NA	unknown function
UHGV-0387863_5	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0387863_8	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0387863_10	PHROG	phrog_134	NA	unknown function
UHGV-0387863_10	UniRef90	UniRef90_A0A223MJ98	XkdX family protein	NA
UHGV-0387863_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0387863_10	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0387863_11	PHROG	phrog_24451	NA	unknown function
UHGV-0387863_11	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-0387863_11	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0387863_12	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0387863_12	eggNOG-mapper	908340.HMPREF9406_2566	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0387863_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0387863_13	PHROG	phrog_5555	tail protein	tail
UHGV-0387863_13	UniRef90	UniRef90_UPI001C394D99	phage tail protein	NA
UHGV-0387863_13	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-0387863_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0387863_13	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0387863_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0387863_13	COG	COG4926	Phage-related protein	NA
UHGV-0387863_13	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0387863_14	UniRef90	UniRef90_UPI00085CD9AD	phage tail family protein	NA
UHGV-0387863_14	eggNOG-mapper	1280689.AUJC01000007_gene3307	phage tail	NA
UHGV-0387863_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0387863_14	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0387863_15	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0387863_15	UniRef90	UniRef90_G1VS78	TMP_3 domain-containing protein	NA
UHGV-0387863_15	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0387863_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0387863_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0387863_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0387863_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0387863_16	PHROG	phrog_706	NA	unknown function
UHGV-0387863_16	UniRef90	UniRef90_UPI001E5E5ED8	bacteriophage Gp15 family protein	NA
UHGV-0387863_16	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0387863_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0387863_16	Structural annotation	PF06854	NA	NA
UHGV-0387863_17	Structural annotation	PF10666	NA	NA
UHGV-0387863_18	PHROG	phrog_3099	NA	unknown function
UHGV-0387863_18	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0387863_19	UniRef90	UniRef90_UPI001430E854	ABC transporter permease	NA
UHGV-0387863_19	Structural annotation	PF16807	NA	NA
UHGV-0387863_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0387863_20	UniRef90	UniRef90_UPI001BA7D0C3	minor capsid protein	NA
UHGV-0387863_20	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-0387863_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0387863_20	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0387863_21	Structural annotation	PF20536	NA	NA
UHGV-0387863_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0387863_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0387863_23	UniRef90	UniRef90_N9VBL2	HK97 family phage major capsid protein	NA
UHGV-0387863_23	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-0387863_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0387863_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0387863_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0387863_23	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0387863_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0387863_24	UniRef90	UniRef90_UPI001EDCE3E2	phage scaffolding protein	NA
UHGV-0387863_24	eggNOG-mapper	999413.HMPREF1094_00216	COG NOG36366 non supervised orthologous group	NA
UHGV-0387863_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0387863_24	Structural annotation	PF06810	NA	NA
UHGV-0387863_25	eggNOG-mapper	999413.HMPREF1094_00217	NA	NA
UHGV-0387863_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0387863_27	UniRef90	UniRef90_A0A223MHV7	Minor capsid protein	NA
UHGV-0387863_27	eggNOG-mapper	999413.HMPREF1094_00219	Phage minor capsid protein 2	NA
UHGV-0387863_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0387863_27	COG	COG2369	NA	NA
UHGV-0387863_27	Structural annotation	PF06152	NA	NA
UHGV-0387863_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0387863_28	UniRef90	UniRef90_C0CSR5	Putative phage minor capsid protein	NA
UHGV-0387863_28	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-0387863_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0387863_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0387863_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0387863_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0387863_29	UniRef90	UniRef90_N9VB01	PBSX family phage terminase, large subunit	NA
UHGV-0387863_29	eggNOG-mapper	999413.HMPREF1094_00221	Phage terminase, large subunit, PBSX family	NA
UHGV-0387863_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0387863_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0387863_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0387863_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0387863_30	UniRef90	UniRef90_A0A223MIM3	Terminase	NA
UHGV-0387863_30	eggNOG-mapper	999413.HMPREF1094_00222	DNA packaging	NA
UHGV-0387863_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0387863_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0387863_30	COG	COG5484	NA	NA
UHGV-0387863_30	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0387863_31	PHROG	phrog_3243	NA	unknown function
UHGV-0387863_31	eggNOG-mapper	428127.EUBDOL_01231	NA	NA
UHGV-0387863_31	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0387863_32	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0387863_32	PHROG	phrog_2577	transposase	integration and excision
UHGV-0387863_32	UniRef90	UniRef90_H1B9A1	Y1_Tnp domain-containing protein	NA
UHGV-0387863_32	eggNOG-mapper	1145276.T479_10350	transposase	NA
UHGV-0387863_32	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0387863_32	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0387863_32	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0387863_32	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0387863_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0387863_33	eggNOG-mapper	999413.HMPREF1094_00224	NA	NA
UHGV-0387863_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0387863_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0387863_37	UniRef90	UniRef90_A0A4U1D0A0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0387863_37	eggNOG-mapper	999413.HMPREF1094_00229	Endodeoxyribonuclease RusA	NA
UHGV-0387863_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0387863_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0387863_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0387863_38	PHROG	phrog_23707	NA	unknown function
UHGV-0387863_38	UniRef90	UniRef90_A0A7X5CDD7	Alanine racemase	NA
UHGV-0387863_38	eggNOG-mapper	552398.HMPREF0866_01624	NA	NA
UHGV-0387863_39	Structural annotation	PF17574	NA	NA
UHGV-0387863_40	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0387863_40	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0387863_40	UniRef90	UniRef90_N9WWG5	PriCT_2 domain-containing protein	NA
UHGV-0387863_40	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0387863_40	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0387863_40	Pfam	PF13481	AAA domain	AAA_25
UHGV-0387863_40	COG	COG3598	RecA-family ATPase	NA
UHGV-0387863_40	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0387863_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0387863_41	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0387863_41	UniRef90	UniRef90_UPI0008F834DE	ParB/RepB/Spo0J family partition protein	NA
UHGV-0387863_41	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0387863_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0387863_41	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0387863_41	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0387863_41	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0387863_42	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0387863_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0387863_42	UniRef90	UniRef90_A0A1Y4QSI3	DEAD/DEAH box helicase	NA
UHGV-0387863_42	eggNOG-mapper	999413.HMPREF1094_00233	helicase superfamily c-terminal domain	NA
UHGV-0387863_42	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0387863_42	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0387863_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0387863_42	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0387863_42	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0387863_43	PHROG	phrog_2698	NA	unknown function
UHGV-0387863_43	UniRef90	UniRef90_UPI001AEC2157	NA	NA
UHGV-0387863_43	eggNOG-mapper	1232449.BAHV02000010_gene2698	NA	NA
UHGV-0387863_43	Structural annotation	PF05037	NA	NA
UHGV-0387863_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0387863_44	UniRef90	UniRef90_UPI001EDD2096	ATP-binding protein	NA
UHGV-0387863_44	eggNOG-mapper	552396.HMPREF0863_02438	AAA domain	NA
UHGV-0387863_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0387863_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0387863_45	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0387863_45	PHROG	phrog_1499	NA	unknown function
UHGV-0387863_45	UniRef90	UniRef90_N9VB14	AAA_23 domain-containing protein	NA
UHGV-0387863_45	eggNOG-mapper	999413.HMPREF1094_00236	AAA ATPase domain	NA
UHGV-0387863_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-0387863_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0387863_45	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0387863_47	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0387863_48	PHROG	phrog_22529	NA	unknown function
UHGV-0387863_48	UniRef90	UniRef90_A0A898FTM7	3D domain-containing protein	NA
UHGV-0387863_48	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0387863_48	Pfam	PF06725	3D domain	3D
UHGV-0387863_48	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0387863_48	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0387863_54	UniRef90	UniRef90_G1VS34	HTH cro/C1-type domain-containing protein	NA
UHGV-0387863_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0387863_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0387863_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0387863_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0387863_56	UniRef90	UniRef90_N9VBN4	HTH cro/C1-type domain-containing protein	NA
UHGV-0387863_56	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0387863_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0387863_56	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0387863_56	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA