UHGV-0388109

Genome information

Genome length 21,299 bps

CDS count 21

Completeness 58.24% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0388109
vOTU ID	vOTU-024011
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_5416
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.76
Jumbo phage	No

Genome content
Genome length	21,299 bps
GC content	43.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	96.75%
Average CDS length	985.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0388109_2	PHROG	phrog_28673	tail protein	tail
UHGV-0388109_2	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0388109_3	PHROG	phrog_3558	tail protein	tail
UHGV-0388109_3	UniRef90	UniRef90_UPI001BE981AD	phage tail protein	NA
UHGV-0388109_3	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0388109_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0388109_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0388109_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0388109_3	COG	COG4926	Phage-related protein	NA
UHGV-0388109_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0388109_4	UniRef90	UniRef90_A0A416L6F4	MtfA protein	NA
UHGV-0388109_4	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0388109_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0388109_4	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0388109_5	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0388109_5	UniRef90	UniRef90_A0A356CYG0	Phage tail tape measure protein	NA
UHGV-0388109_5	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0388109_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0388109_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0388109_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0388109_5	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0388109_6	PHROG	phrog_706	NA	unknown function
UHGV-0388109_6	UniRef90	UniRef90_R5RS25	Bacteriophage Gp15 protein	NA
UHGV-0388109_6	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0388109_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0388109_6	Structural annotation	PF06854	NA	NA
UHGV-0388109_8	PHROG	phrog_820	major tail protein	tail
UHGV-0388109_8	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0388109_8	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0388109_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0388109_9	PHROG	phrog_3266	tail completion	connector
UHGV-0388109_9	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0388109_9	Structural annotation	PF12691	NA	NA
UHGV-0388109_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0388109_10	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0388109_10	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0388109_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0388109_10	Structural annotation	PF11114	NA	NA
UHGV-0388109_11	PHROG	phrog_3366	NA	unknown function
UHGV-0388109_11	Structural annotation	PF20536	NA	NA
UHGV-0388109_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0388109_12	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0388109_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0388109_13	UniRef90	UniRef90_A0A3D3U8R7	Phage major capsid protein	NA
UHGV-0388109_13	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0388109_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0388109_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0388109_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0388109_13	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0388109_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0388109_14	UniRef90	UniRef90_A0A1C5P0Y8	Phage minor structural protein GP20	NA
UHGV-0388109_14	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0388109_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0388109_14	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0388109_15	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0388109_16	PHROG	phrog_918	NA	unknown function
UHGV-0388109_16	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0388109_16	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0388109_16	Pfam	PF19791	NA	DUF6275
UHGV-0388109_16	Structural annotation	PF19791	NA	NA
UHGV-0388109_17	PHROG	phrog_15041	NA	unknown function
UHGV-0388109_17	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0388109_17	Structural annotation	PF10827	NA	NA
UHGV-0388109_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0388109_18	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-0388109_18	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0388109_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0388109_18	COG	COG2369	NA	NA
UHGV-0388109_18	Structural annotation	PF06152	NA	NA
UHGV-0388109_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0388109_19	UniRef90	UniRef90_A0A3D3U9V8	Phage portal protein	NA
UHGV-0388109_19	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0388109_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0388109_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0388109_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0388109_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0388109_20	UniRef90	UniRef90_A0A3D3U8V8	PBSX family phage terminase large subunit	NA
UHGV-0388109_20	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0388109_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0388109_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0388109_20	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0388109_21	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0388109_21	UniRef90	UniRef90_A0A3D3U9Y4	Terminase	NA
UHGV-0388109_21	eggNOG-mapper	999413.HMPREF1094_00222	DNA packaging	NA
UHGV-0388109_21	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0388109_21	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0388109_21	COG	COG5484	NA	NA
UHGV-0388109_21	Structural annotation	PF06056, NF040601, COG5484	NA	NA