UHGV-0388231

Genome information

Genome length 23,788 bps

CDS count 32

Completeness 68.27% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0388231
vOTU ID	vOTU-024369
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4865
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.73
Jumbo phage	No

Genome content
Genome length	23,788 bps
GC content	34.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	95.29%
Average CDS length	711.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0388231_1	PHROG	phrog_7115	NA	unknown function
UHGV-0388231_1	UniRef90	UniRef90_UPI000E3F96B9	PH domain-containing protein	NA
UHGV-0388231_1	eggNOG-mapper	999413.HMPREF1094_00195	Bacterial PH domain	NA
UHGV-0388231_1	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0388231_1	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0388231_2	KOfam	K14059	int; integrase	NA
UHGV-0388231_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0388231_2	UniRef90	UniRef90_A0A6N2YZN3	Transposase from transposon Tn916	NA
UHGV-0388231_2	eggNOG-mapper	226185.EF_2546	Phage integrase family	NA
UHGV-0388231_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0388231_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0388231_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0388231_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0388231_4	PHROG	phrog_3088	amidase	lysis
UHGV-0388231_4	UniRef90	UniRef90_A0A3E3AF17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0388231_4	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0388231_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0388231_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0388231_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0388231_4	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0388231_6	PHROG	phrog_33625	holin	lysis
UHGV-0388231_6	UniRef90	UniRef90_A0A6N3AF02	Bacteriophage holin	NA
UHGV-0388231_6	eggNOG-mapper	1196031.ALEG01000039_gene1391	Bacteriophage holin	NA
UHGV-0388231_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0388231_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0388231_6	COG	COG5546	NA	NA
UHGV-0388231_6	Structural annotation	COG5546	NA	NA
UHGV-0388231_7	PHROG	phrog_24267	NA	unknown function
UHGV-0388231_7	eggNOG-mapper	553973.CLOHYLEM_06931	tail collar domain protein	NA
UHGV-0388231_7	COG	COG4675	Phage tail collar domain	NA
UHGV-0388231_7	Structural annotation	PF10651	NA	NA
UHGV-0388231_8	PHROG	phrog_3558	tail protein	tail
UHGV-0388231_8	UniRef90	UniRef90_A0A6N3AEF7	Peptidase S74 domain-containing protein	NA
UHGV-0388231_8	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0388231_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0388231_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0388231_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0388231_8	COG	COG4926	Phage-related protein	NA
UHGV-0388231_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0388231_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0388231_9	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0388231_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0388231_9	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0388231_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0388231_10	UniRef90	UniRef90_UPI000E4708D5	phage tail tape measure protein	NA
UHGV-0388231_10	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0388231_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0388231_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0388231_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0388231_11	PHROG	phrog_706	NA	unknown function
UHGV-0388231_11	UniRef90	UniRef90_UPI000E52BFC1	Gp15 family bacteriophage protein	NA
UHGV-0388231_11	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0388231_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0388231_11	Structural annotation	PF06854	NA	NA
UHGV-0388231_12	Structural annotation	PF10666	NA	NA
UHGV-0388231_13	PHROG	phrog_820	major tail protein	tail
UHGV-0388231_13	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0388231_13	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0388231_13	COG	COG5492	NA	NA
UHGV-0388231_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0388231_14	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0388231_14	Structural annotation	PF12691	NA	NA
UHGV-0388231_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0388231_15	UniRef90	UniRef90_A0A6N3ACU8	Minor capsid protein	NA
UHGV-0388231_15	eggNOG-mapper	1027396.LMOSA_9610	Minor capsid protein	NA
UHGV-0388231_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0388231_15	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0388231_16	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0388231_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0388231_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0388231_17	eggNOG-mapper	1497679.EP56_07555	NA	NA
UHGV-0388231_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-0388231_18	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0388231_18	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0388231_18	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0388231_20	eggNOG-mapper	596323.HMPREF0554_1580	Belongs to the Dps family	NA
UHGV-0388231_20	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0388231_20	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0388231_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0388231_22	UniRef90	UniRef90_A0A6N3A974	Phage minor capsid protein 2	NA
UHGV-0388231_22	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0388231_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0388231_22	COG	COG2369	NA	NA
UHGV-0388231_22	Structural annotation	PF06152	NA	NA
UHGV-0388231_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0388231_23	UniRef90	UniRef90_A0A6N3AB16	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0388231_23	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0388231_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0388231_23	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0388231_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0388231_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0388231_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0388231_24	UniRef90	UniRef90_A0A6N3ALZ5	Terminase-like family protein	NA
UHGV-0388231_24	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0388231_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0388231_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0388231_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0388231_24	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0388231_25	UniRef90	UniRef90_A0A3E3EF98	Helix-turn-helix domain-containing protein	NA
UHGV-0388231_25	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0388231_25	Structural annotation	PF13542	NA	NA
UHGV-0388231_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0388231_30	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0388231_30	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0388231_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0388231_30	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA