UHGV-0388717

Genome information

vOTU vOTU-071918

Genome length 37,293 bps

CDS count 49

Completeness 92.82% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0388717
vOTU ID	vOTU-071918
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2208
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.7
Jumbo phage	No

Genome content
Genome length	37,293 bps
GC content	45.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.36%
Average CDS length	712.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0388717_1	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0388717_1	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0388717_2	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0388717_2	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0388717_3	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0388717_4	PHROG	phrog_18725	NA	unknown function
UHGV-0388717_4	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0388717_5	PHROG	phrog_32744	NA	unknown function
UHGV-0388717_5	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0388717_5	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0388717_6	PHROG	phrog_1194	NA	unknown function
UHGV-0388717_6	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0388717_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0388717_7	PHROG	phrog_37543	NA	unknown function
UHGV-0388717_7	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0388717_7	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0388717_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0388717_7	Structural annotation	PF11177, PF09486, TIGR02559, COG3237, COG1842	NA	NA
UHGV-0388717_8	PHROG	phrog_706	NA	unknown function
UHGV-0388717_8	UniRef90	UniRef90_UPI00192502EA	Gp15 family bacteriophage protein	NA
UHGV-0388717_8	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0388717_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0388717_8	Structural annotation	PF06854	NA	NA
UHGV-0388717_9	PHROG	phrog_11299	NA	unknown function
UHGV-0388717_9	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0388717_10	PHROG	phrog_3099	NA	unknown function
UHGV-0388717_10	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0388717_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0388717_11	PHROG	phrog_3266	tail completion	connector
UHGV-0388717_11	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0388717_11	Structural annotation	PF20765	NA	NA
UHGV-0388717_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0388717_12	UniRef90	UniRef90_UPI000E44F835	minor capsid protein	NA
UHGV-0388717_12	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0388717_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0388717_12	Structural annotation	PF11114	NA	NA
UHGV-0388717_13	PHROG	phrog_3366	NA	unknown function
UHGV-0388717_13	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0388717_13	Pfam	PF20536	NA	DUF6751
UHGV-0388717_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0388717_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0388717_14	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0388717_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0388717_15	UniRef90	UniRef90_UPI000E438149	phage major capsid protein	NA
UHGV-0388717_15	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0388717_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0388717_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0388717_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0388717_15	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0388717_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0388717_16	UniRef90	UniRef90_C0CSR8	Phage minor structural protein GP20	NA
UHGV-0388717_16	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0388717_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0388717_16	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0388717_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0388717_17	UniRef90	UniRef90_UPI0011DD57C7	phage minor capsid protein	NA
UHGV-0388717_17	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0388717_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0388717_17	COG	COG2369	NA	NA
UHGV-0388717_17	Structural annotation	PF06152	NA	NA
UHGV-0388717_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0388717_18	UniRef90	UniRef90_UPI000E44E6B1	phage portal protein	NA
UHGV-0388717_18	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0388717_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0388717_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0388717_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0388717_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0388717_19	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-0388717_19	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0388717_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0388717_19	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0388717_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0388717_20	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0388717_20	UniRef90	UniRef90_UPI000E43164E	terminase small subunit	NA
UHGV-0388717_20	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0388717_20	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0388717_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0388717_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0388717_20	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0388717_21	PHROG	phrog_1558	NA	unknown function
UHGV-0388717_21	UniRef90	UniRef90_UPI001D093592	helix-turn-helix domain-containing protein	NA
UHGV-0388717_21	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-0388717_21	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0388717_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0388717_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0388717_22	UniRef90	UniRef90_UPI001D08B3B6	tyrosine-type recombinase/integrase	NA
UHGV-0388717_22	eggNOG-mapper	1235811.HMPREF0653_00737	Belongs to the 'phage' integrase family	NA
UHGV-0388717_22	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0388717_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0388717_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0388717_22	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0388717_25	Structural annotation	PF16535, NF011863	NA	NA
UHGV-0388717_26	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0388717_26	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0388717_26	UniRef90	UniRef90_A8RGI9	Helicase ATP-binding domain-containing protein	NA
UHGV-0388717_26	eggNOG-mapper	411902.CLOBOL_00156	COG COG0553 Superfamily II DNA RNA helicases, SNF2 family	NA
UHGV-0388717_26	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0388717_26	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0388717_26	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0388717_26	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0388717_27	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0388717_27	UniRef90	UniRef90_A8RGJ0	VRR-NUC domain-containing protein	NA
UHGV-0388717_27	eggNOG-mapper	411902.CLOBOL_00157	COG NOG18350 non supervised orthologous group	NA
UHGV-0388717_27	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0388717_28	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0388717_28	UniRef90	UniRef90_A0A4Q7PPS0	Virulence-associated protein E	NA
UHGV-0388717_28	eggNOG-mapper	411902.CLOBOL_02544	Virulence-associated protein E	NA
UHGV-0388717_28	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0388717_28	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0388717_28	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0388717_29	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0388717_29	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0388717_29	UniRef90	UniRef90_A8RPR8	POLAc domain-containing protein	NA
UHGV-0388717_29	eggNOG-mapper	411902.CLOBOL_02545	COG COG0749 DNA polymerase I - 3-5 exonuclease and polymerase domains	NA
UHGV-0388717_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0388717_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0388717_29	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0388717_30	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0388717_30	UniRef90	UniRef90_A0A2S1QKX0	NA	NA
UHGV-0388717_30	eggNOG-mapper	1321782.HMPREF1986_02251	NA	NA
UHGV-0388717_30	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0388717_30	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0388717_31	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0388717_31	UniRef90	UniRef90_A0A5B9YEW0	NA	NA
UHGV-0388717_31	eggNOG-mapper	411902.CLOBOL_02547	COG NOG07892 non supervised orthologous group	NA
UHGV-0388717_31	Pfam	PF10926	NA	DUF2800
UHGV-0388717_31	COG	COG2887	RecB family exonuclease	NA
UHGV-0388717_31	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0388717_32	PHROG	phrog_408	NA	unknown function
UHGV-0388717_32	UniRef90	UniRef90_A0A3A1R2A3	rRNA biogenesis protein rrp5	NA
UHGV-0388717_32	eggNOG-mapper	1408424.JHYI01000032_gene3846	NA	NA
UHGV-0388717_33	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0388717_33	UniRef90	UniRef90_A0A174X6P5	Bacterial seryl-tRNA synthetase related	NA
UHGV-0388717_33	eggNOG-mapper	411902.CLOBOL_02549	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0388717_33	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0388717_33	COG	COG4443	NA	NA
UHGV-0388717_33	Structural annotation	COG4443	NA	NA
UHGV-0388717_37	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0388717_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0388717_38	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0388717_38	UniRef90	UniRef90_A0A6N7WM94	Helix-turn-helix transcriptional regulator	NA
UHGV-0388717_38	eggNOG-mapper	1408322.JHYK01000005_gene585	Helix-turn-helix domain	NA
UHGV-0388717_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0388717_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0388717_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0388717_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0388717_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0388717_39	UniRef90	UniRef90_A0A373D3R0	XRE family transcriptional regulator	NA
UHGV-0388717_39	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0388717_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0388717_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0388717_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0388717_39	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0388717_40	PHROG	phrog_20886	NA	unknown function
UHGV-0388717_40	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0388717_40	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0388717_40	Structural annotation	PF06114	NA	NA
UHGV-0388717_41	UniRef90	UniRef90_UPI001EDCCFB6	phage minor capsid protein	NA
UHGV-0388717_41	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0388717_41	Structural annotation	PF06152	NA	NA
UHGV-0388717_42	PHROG	phrog_16228	NA	unknown function
UHGV-0388717_42	UniRef90	UniRef90_D3AA84	Uma2 domain-containing protein	NA
UHGV-0388717_42	eggNOG-mapper	478749.BRYFOR_07230	Putative restriction endonuclease	NA
UHGV-0388717_42	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0388717_42	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0388717_42	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0388717_43	KOfam	K14059	int; integrase	NA
UHGV-0388717_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0388717_43	UniRef90	UniRef90_A0A174WFF5	Phage integrase family site specific recombinase	NA
UHGV-0388717_43	eggNOG-mapper	1304866.K413DRAFT_0837	Phage integrase family	NA
UHGV-0388717_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0388717_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0388717_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0388717_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0388717_44	PHROG	phrog_9589	endolysin	lysis
UHGV-0388717_44	UniRef90	UniRef90_A0A413LU17	CHAP domain-containing protein	NA
UHGV-0388717_44	eggNOG-mapper	1298920.KI911353_gene4832	Peptidoglycan-binding domain 1 protein	NA
UHGV-0388717_44	Pfam	PF05257	CHAP domain	CHAP
UHGV-0388717_44	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0388717_44	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0388717_44	Structural annotation	PF00877, PF19127, TIGR02594, TIGR04035, COG3738	NA	NA
UHGV-0388717_45	PHROG	phrog_18218	NA	unknown function
UHGV-0388717_45	UniRef90	UniRef90_UPI001C0EBFB3	ribonuclease	NA
UHGV-0388717_45	eggNOG-mapper	742733.HMPREF9469_02858	NA	NA
UHGV-0388717_45	Structural annotation	PF06946	NA	NA
UHGV-0388717_46	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-0388717_46	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0388717_47	PHROG	phrog_134	NA	unknown function
UHGV-0388717_47	UniRef90	UniRef90_A0A174KS18	AraC family transcriptional regulator	NA
UHGV-0388717_47	eggNOG-mapper	1304866.K413DRAFT_0766	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0388717_47	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0388717_47	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0388717_48	PHROG	phrog_12931	NA	unknown function
UHGV-0388717_48	eggNOG-mapper	1298920.KI911353_gene2672	NA	NA