UHGV-0389374

Genome information

Genome length 23,259 bps

CDS count 26

Completeness 61.25% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0389374
vOTU ID	vOTU-032789
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4986
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.03
Jumbo phage	No

Genome content
Genome length	23,259 bps
GC content	43.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.43%
Average CDS length	856.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0389374_2	UniRef90	UniRef90_A0A1F2H8L2	Terminase	NA
UHGV-0389374_2	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0389374_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0389374_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0389374_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0389374_3	UniRef90	UniRef90_A0A2C5WCW2	PBSX family phage terminase large subunit	NA
UHGV-0389374_3	eggNOG-mapper	646413.C5IUJ1_9CAUD	Pfam:Terminase_3C	NA
UHGV-0389374_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0389374_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0389374_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0389374_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0389374_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0389374_4	UniRef90	UniRef90_A0A2C5WJ41	Capsid protein	NA
UHGV-0389374_4	eggNOG-mapper	764291.STRUR_2107	portal protein	NA
UHGV-0389374_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0389374_4	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0389374_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0389374_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0389374_5	UniRef90	UniRef90_A0A2C5WFX9	Capsid protein	NA
UHGV-0389374_5	eggNOG-mapper	646413.C5IUJ3_9CAUD	Phage minor capsid protein 2	NA
UHGV-0389374_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0389374_5	Structural annotation	PF06152	NA	NA
UHGV-0389374_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0389374_6	UniRef90	UniRef90_A0A1V0H808	Scaffolding protein	NA
UHGV-0389374_6	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0389374_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0389374_6	Structural annotation	PF06810	NA	NA
UHGV-0389374_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0389374_7	UniRef90	UniRef90_A0A2C5VZS4	N4-gp56 family major capsid protein	NA
UHGV-0389374_7	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0389374_7	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0389374_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0389374_9	UniRef90	UniRef90_A0A501VK26	NA	NA
UHGV-0389374_9	eggNOG-mapper	764291.STRUR_2099	NA	NA
UHGV-0389374_10	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0389374_10	UniRef90	UniRef90_A0A2C5WI04	Minor capsid protein	NA
UHGV-0389374_10	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0389374_10	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0389374_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0389374_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0389374_11	UniRef90	UniRef90_A0A2L2PBJ6	Capsid protein	NA
UHGV-0389374_11	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-0389374_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0389374_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0389374_12	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0389374_12	UniRef90	UniRef90_A0A2C5WHK7	Capsid protein	NA
UHGV-0389374_12	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0389374_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0389374_12	Structural annotation	PF12691	NA	NA
UHGV-0389374_13	PHROG	phrog_820	major tail protein	tail
UHGV-0389374_13	UniRef90	UniRef90_A0A448A8F6	Tail shaft protein	NA
UHGV-0389374_13	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-0389374_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0389374_14	PHROG	phrog_1061	NA	unknown function
UHGV-0389374_14	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-0389374_14	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-0389374_14	Structural annotation	PF10666	NA	NA
UHGV-0389374_15	PHROG	phrog_706	NA	unknown function
UHGV-0389374_15	UniRef90	UniRef90_A0A448A9A1	NA	NA
UHGV-0389374_15	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0389374_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0389374_15	Structural annotation	PF06854	NA	NA
UHGV-0389374_16	PHROG	phrog_1204	tail protein	tail
UHGV-0389374_16	UniRef90	UniRef90_A0A564TR49	Secretion system effector C (SseC) like family protein	NA
UHGV-0389374_16	eggNOG-mapper	646413.C5IUK3_9CAUD	transmembrane transport	NA
UHGV-0389374_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0389374_16	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0389374_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0389374_17	UniRef90	UniRef90_A0A3S4NZK7	Prophage Lp1 protein 51	NA
UHGV-0389374_17	eggNOG-mapper	646413.C5IUK4_9CAUD	NA	NA
UHGV-0389374_17	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0389374_18	PHROG	phrog_3558	tail protein	tail
UHGV-0389374_18	UniRef90	UniRef90_A0A4D6AHZ4	Cell wall protein	NA
UHGV-0389374_18	eggNOG-mapper	646413.C5IUK5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0389374_18	Pfam	PF08481	GBS Bsp-like repeat	GBS_Bsp-like
UHGV-0389374_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0389374_18	Structural annotation	PF14594, PF08481, TIGR01665, COG4926, COG3330	NA	NA
UHGV-0389374_19	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0389374_19	PHROG	phrog_18023	tail fiber protein	tail
UHGV-0389374_19	UniRef90	UniRef90_A0A3S4MPM1	Pectinesterase	NA
UHGV-0389374_19	eggNOG-mapper	431943.CKL_0520	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0389374_19	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0389374_19	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0389374_19	Structural annotation	PF13472, PF21254, NF007819, COG2755	NA	NA
UHGV-0389374_20	PHROG	phrog_199	holin	lysis
UHGV-0389374_20	UniRef90	UniRef90_A0A1F2H8L5	Holin	NA
UHGV-0389374_20	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0389374_20	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0389374_20	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0389374_20	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0389374_21	PHROG	phrog_962	holin	lysis
UHGV-0389374_21	UniRef90	UniRef90_A0A1V0H822	Phage holin	NA
UHGV-0389374_21	eggNOG-mapper	888049.HMPREF8578_0250	COG5546 Small integral membrane protein	NA
UHGV-0389374_21	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0389374_21	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0389374_21	COG	COG5546	NA	NA
UHGV-0389374_21	Structural annotation	COG5546	NA	NA
UHGV-0389374_22	PHROG	phrog_6487	NA	unknown function
UHGV-0389374_22	UniRef90	UniRef90_A0A3S4LRZ3	NA	NA
UHGV-0389374_22	eggNOG-mapper	365659.smi_0474	NA	NA
UHGV-0389374_22	Structural annotation	PF10651, NF041178, COG5456	NA	NA
UHGV-0389374_23	PHROG	phrog_4757	NA	unknown function
UHGV-0389374_25	PHROG	phrog_998	endolysin	lysis
UHGV-0389374_25	UniRef90	UniRef90_A0A2C5WIM8	Peptidoglycan hydrolase	NA
UHGV-0389374_25	eggNOG-mapper	1069533.Sinf_0802	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0389374_25	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0389374_25	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-0389374_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0389374_25	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA
UHGV-0389374_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0389374_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0389374_26	UniRef90	UniRef90_A0A564TSP0	DNA-invertase hin	NA
UHGV-0389374_26	eggNOG-mapper	1035189.HMPREF9954_0280	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0389374_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0389374_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0389374_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0389374_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0389374_26	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA