UHGV-0390211

Genome information

Genome length 21,375 bps

CDS count 25

Completeness 54.22% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0390211
vOTU ID	vOTU-032807
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_5399
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.66
Jumbo phage	No

Genome content
Genome length	21,375 bps
GC content	36.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	95.74%
Average CDS length	821.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0390211_2	eggNOG-mapper	1235800.C819_03386	NA	NA
UHGV-0390211_2	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-0390211_4	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0390211_4	UniRef90	UniRef90_UPI0018980930	Abi family protein	NA
UHGV-0390211_4	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-0390211_4	PADLOC	AbiD	AbiD	Abi
UHGV-0390211_4	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0390211_4	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0390211_4	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0390211_5	PHROG	phrog_1129	holin	lysis
UHGV-0390211_5	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0390211_5	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0390211_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0390211_6	UniRef90	UniRef90_UPI001922BDE8	NA	NA
UHGV-0390211_6	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0390211_6	Structural annotation	PF11195	NA	NA
UHGV-0390211_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0390211_8	PHROG	phrog_7698	endolysin	lysis
UHGV-0390211_8	UniRef90	UniRef90_UPI0009861559	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0390211_8	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0390211_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0390211_8	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0390211_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0390211_10	PHROG	phrog_24267	NA	unknown function
UHGV-0390211_10	UniRef90	UniRef90_UPI000BB4EEB2	BppU family phage baseplate upper protein	NA
UHGV-0390211_10	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0390211_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0390211_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0390211_10	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0390211_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0390211_11	UniRef90	UniRef90_A0A4U9RA14	Phage endopeptidase	NA
UHGV-0390211_11	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0390211_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0390211_11	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0390211_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0390211_11	COG	COG4926	Phage-related protein	NA
UHGV-0390211_11	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0390211_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0390211_12	UniRef90	UniRef90_A0A358PXF7	Phage tail protein	NA
UHGV-0390211_12	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-0390211_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0390211_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0390211_13	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0390211_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0390211_13	UniRef90	UniRef90_UPI00129E2108	phage tail tape measure protein	NA
UHGV-0390211_13	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0390211_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0390211_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0390211_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0390211_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0390211_14	PHROG	phrog_2115	tail protein	tail
UHGV-0390211_14	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0390211_14	Structural annotation	PF11836	NA	NA
UHGV-0390211_15	PHROG	phrog_88	major tail protein	tail
UHGV-0390211_15	UniRef90	UniRef90_A0A174CNN5	Phage major tail protein, phi13 family	NA
UHGV-0390211_15	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0390211_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0390211_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0390211_16	PHROG	phrog_78	tail terminator	connector
UHGV-0390211_16	UniRef90	UniRef90_UPI001C54EC97	NA	NA
UHGV-0390211_16	eggNOG-mapper	1195236.CTER_5107	NA	NA
UHGV-0390211_16	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0390211_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0390211_17	UniRef90	UniRef90_R5S8G2	HK97 gp10 family phage protein	NA
UHGV-0390211_17	eggNOG-mapper	1235793.C809_01923	NA	NA
UHGV-0390211_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0390211_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0390211_17	Structural annotation	TIGR01725	NA	NA
UHGV-0390211_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0390211_18	UniRef90	UniRef90_E7GJW6	Phage head-tail adaptor	NA
UHGV-0390211_18	eggNOG-mapper	1235800.C819_02933	Phage head-tail joining protein	NA
UHGV-0390211_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0390211_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0390211_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0390211_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0390211_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0390211_19	UniRef90	UniRef90_UPI000773A5A6	head-tail connector protein	NA
UHGV-0390211_19	eggNOG-mapper	536232.CLM_1660	Phage gp6-like head-tail connector protein	NA
UHGV-0390211_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0390211_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0390211_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0390211_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0390211_20	UniRef90	UniRef90_UPI000C76C68B	phage major capsid protein	NA
UHGV-0390211_20	eggNOG-mapper	536232.CLM_1659	Phage major capsid protein, HK97 family	NA
UHGV-0390211_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0390211_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0390211_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0390211_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0390211_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0390211_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0390211_21	UniRef90	UniRef90_R6FVQ7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0390211_21	eggNOG-mapper	1567013.A0A0A7RTN2_9CAUD	Clp protease	NA
UHGV-0390211_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0390211_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0390211_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0390211_22	UniRef90	UniRef90_A0A3F2ZQR1	Phage portal protein, HK97 family	NA
UHGV-0390211_22	eggNOG-mapper	536232.CLM_1657	Phage portal protein, HK97 family	NA
UHGV-0390211_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0390211_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0390211_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0390211_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0390211_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0390211_23	UniRef90	UniRef90_A0A1S8RB60	Phage terminase	NA
UHGV-0390211_23	eggNOG-mapper	536232.CLM_1656	Terminase	NA
UHGV-0390211_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0390211_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0390211_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0390211_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0390211_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0390211_24	UniRef90	UniRef90_UPI0019048959	phage terminase small subunit P27 family	NA
UHGV-0390211_24	eggNOG-mapper	536232.CLM_1655	Phage terminase, small subunit	NA
UHGV-0390211_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0390211_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0390211_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0390211_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0390211_25	PHROG	phrog_20533	NA	unknown function
UHGV-0390211_25	UniRef90	UniRef90_A0A413FXL7	PLD phosphodiesterase domain-containing protein	NA
UHGV-0390211_25	eggNOG-mapper	1392490.JHZX01000001_gene2429	NA	NA
UHGV-0390211_25	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA