UHGV-0390214

Genome information

vOTU vOTU-020721

Genome length 25,132 bps

CDS count 37

Completeness 65.61% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0390214
vOTU ID	vOTU-020721
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_4632
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.98
Jumbo phage	No

Genome content
Genome length	25,132 bps
GC content	58.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	95.81%
Average CDS length	655.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0390214_1	PHROG	phrog_22543	NA	unknown function
UHGV-0390214_1	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0390214_2	PHROG	phrog_33866	NA	unknown function
UHGV-0390214_3	PHROG	phrog_25385	NA	unknown function
UHGV-0390214_3	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0390214_4	PHROG	phrog_22389	NA	unknown function
UHGV-0390214_4	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0390214_5	PHROG	phrog_5978	NA	unknown function
UHGV-0390214_5	UniRef90	UniRef90_A0A658JWN7	Fic family protein	NA
UHGV-0390214_5	eggNOG-mapper	742818.HMPREF9451_01729	Filamentation induced by cAMP protein fic	NA
UHGV-0390214_5	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0390214_5	COG	COG3177	Fic family protein	NA
UHGV-0390214_5	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0390214_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0390214_6	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0390214_6	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0390214_7	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0390214_7	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0390214_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0390214_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0390214_9	UniRef90	UniRef90_A0A1Y4LP82	HNH endonuclease	NA
UHGV-0390214_9	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0390214_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0390214_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0390214_9	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0390214_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0390214_10	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-0390214_10	eggNOG-mapper	1501230.ET33_21205	Phage terminase, small subunit	NA
UHGV-0390214_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0390214_10	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0390214_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0390214_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0390214_13	UniRef90	UniRef90_A0A6N3FX18	Phage Terminase	NA
UHGV-0390214_13	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0390214_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0390214_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0390214_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0390214_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0390214_14	Pfam	PF06341	NA	DUF1056
UHGV-0390214_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0390214_15	UniRef90	UniRef90_A0A1Y4L2Q1	Phage portal protein	NA
UHGV-0390214_15	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0390214_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0390214_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0390214_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0390214_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0390214_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0390214_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0390214_16	UniRef90	UniRef90_A0A1Y4L2P7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0390214_16	eggNOG-mapper	1121864.OMO_01325	Clp protease	NA
UHGV-0390214_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0390214_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0390214_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0390214_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0390214_17	UniRef90	UniRef90_A0A1Y4L322	Phage major capsid protein	NA
UHGV-0390214_17	eggNOG-mapper	1007103.AFHW01000142_gene1299	Phage capsid family	NA
UHGV-0390214_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0390214_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0390214_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0390214_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0390214_18	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0390214_18	UniRef90	UniRef90_A0A844A7Y2	Phage gp6-like head-tail connector protein	NA
UHGV-0390214_18	eggNOG-mapper	266779.Meso_1889	Phage gp6-like head-tail connector protein	NA
UHGV-0390214_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0390214_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0390214_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0390214_19	PHROG	phrog_29848	NA	unknown function
UHGV-0390214_19	UniRef90	UniRef90_UPI0018989B1A	head-tail adaptor protein	NA
UHGV-0390214_19	eggNOG-mapper	1121334.KB911073_gene1861	NA	NA
UHGV-0390214_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0390214_20	eggNOG-mapper	1291050.JAGE01000001_gene2925	NA	NA
UHGV-0390214_20	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0390214_21	Pfam	PF20765	NA	DUF6838
UHGV-0390214_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0390214_22	PHROG	phrog_1480	tail sheath	tail
UHGV-0390214_22	UniRef90	UniRef90_A0A8J6JFP4	Phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0390214_22	eggNOG-mapper	1297617.JPJD01000034_gene682	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0390214_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0390214_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0390214_22	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0390214_23	PHROG	phrog_365	tail protein	tail
UHGV-0390214_23	UniRef90	UniRef90_A0A1Y4LLU7	Phage portal protein	NA
UHGV-0390214_23	eggNOG-mapper	742738.HMPREF9460_01375	Phage tail tube protein	NA
UHGV-0390214_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0390214_23	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0390214_24	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0390214_24	UniRef90	UniRef90_UPI00067FC4CD	XkdN	NA
UHGV-0390214_24	eggNOG-mapper	568816.Acin_1967	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0390214_24	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0390214_24	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0390214_25	PHROG	phrog_2722	NA	unknown function
UHGV-0390214_26	PHROG	phrog_33570	NA	unknown function
UHGV-0390214_26	UniRef90	UniRef90_A0A1Y4L2R3	TMP_3 domain-containing protein	NA
UHGV-0390214_26	eggNOG-mapper	1291050.JAGE01000001_gene2931	tape measure	NA
UHGV-0390214_26	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0390214_26	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0390214_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0390214_26	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0390214_27	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0390214_27	PHROG	phrog_380	endolysin	lysis
UHGV-0390214_27	UniRef90	UniRef90_A0A1Y4LLY0	LysM domain-containing protein	NA
UHGV-0390214_27	eggNOG-mapper	1291050.JAGE01000001_gene2932	Lysin motif	NA
UHGV-0390214_27	Pfam	PF01476	LysM domain	LysM
UHGV-0390214_27	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0390214_27	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0390214_28	PHROG	phrog_400	tail protein	tail
UHGV-0390214_28	UniRef90	UniRef90_A0A7S7J193	Alpha/beta hydrolase	NA
UHGV-0390214_28	eggNOG-mapper	1291050.JAGE01000001_gene2933	NLP P60 protein	NA
UHGV-0390214_28	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0390214_28	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0390214_29	Pfam	PF10844	NA	DUF2577
UHGV-0390214_30	PHROG	phrog_120	baseplate protein	tail
UHGV-0390214_30	UniRef90	UniRef90_UPI000B35FE50	NA	NA
UHGV-0390214_30	eggNOG-mapper	756499.Desde_4123	NA	NA
UHGV-0390214_30	Pfam	PF10934	NA	DUF2634
UHGV-0390214_30	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0390214_30	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0390214_31	PHROG	phrog_6	baseplate protein	tail
UHGV-0390214_31	UniRef90	UniRef90_A0A1Y4LPA0	Baseplate_J domain-containing protein	NA
UHGV-0390214_31	eggNOG-mapper	1121334.KB911073_gene1870	baseplate J-like protein	NA
UHGV-0390214_31	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0390214_31	COG	COG3299	NA	NA
UHGV-0390214_31	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0390214_32	PHROG	phrog_521	tail protein	tail
UHGV-0390214_32	UniRef90	UniRef90_UPI0013DE35A8	NA	NA
UHGV-0390214_32	eggNOG-mapper	1203606.HMPREF1526_00341	NA	NA
UHGV-0390214_32	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0390214_32	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0390214_32	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0390214_33	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0390214_33	eggNOG-mapper	1203606.HMPREF1526_00342	NA	NA
UHGV-0390214_33	Structural annotation	PF12571	NA	NA
UHGV-0390214_34	KOfam	K06882	NA	NA
UHGV-0390214_34	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0390214_34	UniRef90	UniRef90_UPI0006884E33	fibronectin type III domain-containing protein	NA
UHGV-0390214_34	eggNOG-mapper	1203606.HMPREF1526_01356	cell wall binding repeat	NA
UHGV-0390214_34	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0390214_35	PHROG	phrog_27545	NA	unknown function
UHGV-0390214_35	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0390214_35	eggNOG-mapper	1203606.HMPREF1526_00344	NA	NA
UHGV-0390214_36	PHROG	phrog_199	holin	lysis
UHGV-0390214_36	UniRef90	UniRef90_A0A1Y4LQZ5	Holin	NA
UHGV-0390214_36	eggNOG-mapper	1203606.HMPREF1526_00345	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0390214_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0390214_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0390214_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0390214_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0390214_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0390214_37	PHROG	phrog_435	endolysin	lysis
UHGV-0390214_37	UniRef90	UniRef90_A0A1Y4LLZ2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0390214_37	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0390214_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0390214_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0390214_37	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA