UHGV-0390677

Genome information

vOTU vOTU-020739

Genome length 34,203 bps

CDS count 55

Completeness 85.68% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0390677
vOTU ID	vOTU-020739
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_3363
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.17
Jumbo phage	No

Genome content
Genome length	34,203 bps
GC content	46.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.46%
Average CDS length	572.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0390677_2	UniRef90	UniRef90_A0A7X2TCY8	NA	NA
UHGV-0390677_2	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0390677_3	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0390677_3	UniRef90	UniRef90_A0A6N3I098	ORF6C domain protein	NA
UHGV-0390677_3	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0390677_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0390677_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0390677_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0390677_3	Structural annotation	PF10552, PF02498, NF033622, COG3617	NA	NA
UHGV-0390677_4	PHROG	phrog_750	NA	unknown function
UHGV-0390677_4	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0390677_4	Structural annotation	PF13835, TIGR01714, COG1321	NA	NA
UHGV-0390677_7	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0390677_7	UniRef90	UniRef90_A0A2T3F5K8	XRE family transcriptional regulator	NA
UHGV-0390677_7	eggNOG-mapper	768486.EHR_00850	Helix-turn-helix XRE-family like proteins	NA
UHGV-0390677_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0390677_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0390677_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0390677_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0390677_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0390677_8	UniRef90	UniRef90_A0A6L9HDE1	XRE family transcriptional regulator	NA
UHGV-0390677_8	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0390677_8	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0390677_8	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0390677_8	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0390677_9	PHROG	phrog_87	metallo-protease	other
UHGV-0390677_9	UniRef90	UniRef90_A0A3R6LPT6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0390677_9	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0390677_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0390677_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0390677_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0390677_10	eggNOG-mapper	511680.BUTYVIB_01634	NA	NA
UHGV-0390677_10	Structural annotation	PF01096, TIGR04165, COG3478	NA	NA
UHGV-0390677_11	UniRef90	UniRef90_A0A7X5CCT5	NA	NA
UHGV-0390677_11	eggNOG-mapper	411470.RUMGNA_03092	NA	NA
UHGV-0390677_11	Pfam	PF09858	NA	DUF2085
UHGV-0390677_11	COG	COG3815	NA	NA
UHGV-0390677_11	Structural annotation	PF09858, COG3815	NA	NA
UHGV-0390677_12	KOfam	K14059	int; integrase	NA
UHGV-0390677_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0390677_12	UniRef90	UniRef90_A0A4R4FF23	Site-specific integrase	NA
UHGV-0390677_12	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0390677_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0390677_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0390677_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0390677_13	PHROG	phrog_38078	NA	unknown function
UHGV-0390677_13	UniRef90	UniRef90_A0A7X2TC75	CHAP domain-containing protein	NA
UHGV-0390677_13	eggNOG-mapper	1298920.KI911353_gene4832	Peptidoglycan-binding domain 1 protein	NA
UHGV-0390677_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-0390677_13	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0390677_13	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0390677_13	Structural annotation	PF00877, PF19127, TIGR02594, TIGR04035, COG3738	NA	NA
UHGV-0390677_14	PHROG	phrog_199	holin	lysis
UHGV-0390677_14	UniRef90	UniRef90_A0A416TQH0	Holin	NA
UHGV-0390677_14	eggNOG-mapper	552396.HMPREF0863_00264	Bacteriophage holin family	NA
UHGV-0390677_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0390677_14	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0390677_14	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0390677_15	UniRef90	UniRef90_A0A2T3F842	XkdX family protein	NA
UHGV-0390677_15	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0390677_15	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0390677_16	eggNOG-mapper	742733.HMPREF9469_01800	NA	NA
UHGV-0390677_17	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0390677_18	eggNOG-mapper	1304866.K413DRAFT_1240	NA	NA
UHGV-0390677_19	PHROG	phrog_3558	tail protein	tail
UHGV-0390677_19	UniRef90	UniRef90_A0A1Y4R3H1	Prophage_tail domain-containing protein	NA
UHGV-0390677_19	eggNOG-mapper	1304866.K413DRAFT_1236	Phage minor structural protein, N-terminal	NA
UHGV-0390677_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0390677_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0390677_19	COG	COG4926	Phage-related protein	NA
UHGV-0390677_19	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0390677_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0390677_20	UniRef90	UniRef90_A0A8B2WXS9	MtfA protein	NA
UHGV-0390677_20	eggNOG-mapper	1235792.C808_05349	NA	NA
UHGV-0390677_20	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0390677_20	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0390677_21	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0390677_21	UniRef90	UniRef90_A0A2T3F007	TMP_3 domain-containing protein	NA
UHGV-0390677_21	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0390677_21	COG	COG1511	NA	NA
UHGV-0390677_22	eggNOG-mapper	411468.CLOSCI_02407	NA	NA
UHGV-0390677_23	PHROG	phrog_706	NA	unknown function
UHGV-0390677_23	UniRef90	UniRef90_UPI001C8DC2CB	Gp15 family bacteriophage protein	NA
UHGV-0390677_23	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0390677_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0390677_23	Structural annotation	PF06854	NA	NA
UHGV-0390677_24	PHROG	phrog_4450	NA	unknown function
UHGV-0390677_24	UniRef90	UniRef90_A0A7G5NTM6	AP endonuclease	NA
UHGV-0390677_24	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0390677_24	Pfam	PF20378	NA	DUF6673
UHGV-0390677_24	Structural annotation	PF20378	NA	NA
UHGV-0390677_25	PHROG	phrog_3099	NA	unknown function
UHGV-0390677_25	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-0390677_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0390677_25	Structural annotation	PF13715, PF08813, TIGR02126, TIGR04134, COG5437	NA	NA
UHGV-0390677_26	PHROG	phrog_3266	tail completion	connector
UHGV-0390677_26	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0390677_26	Structural annotation	PF12691	NA	NA
UHGV-0390677_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0390677_27	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0390677_27	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0390677_27	Structural annotation	PF11114	NA	NA
UHGV-0390677_28	PHROG	phrog_3366	NA	unknown function
UHGV-0390677_28	eggNOG-mapper	411461.DORFOR_00742	NA	NA
UHGV-0390677_28	Pfam	PF20536	NA	DUF6751
UHGV-0390677_28	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0390677_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0390677_29	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0390677_30	UniRef90	UniRef90_A0A173UTP1	Head fiber protein	NA
UHGV-0390677_30	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0390677_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0390677_31	UniRef90	UniRef90_A0A8B2X5T9	Phage major capsid protein	NA
UHGV-0390677_31	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0390677_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0390677_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0390677_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0390677_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0390677_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0390677_32	eggNOG-mapper	1235792.C808_05367	NA	NA
UHGV-0390677_33	KOfam	K07584	NA	NA
UHGV-0390677_33	PHROG	phrog_4478	peptidase	other
UHGV-0390677_33	UniRef90	UniRef90_A0A8B2WXT7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0390677_33	eggNOG-mapper	1235792.C808_05366	Pfam:Peptidase_C108	NA
UHGV-0390677_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0390677_33	COG	COG2868	NA	NA
UHGV-0390677_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0390677_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0390677_34	UniRef90	UniRef90_A0A8B2X245	Minor capsid protein	NA
UHGV-0390677_34	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0390677_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0390677_34	COG	COG2369	NA	NA
UHGV-0390677_34	Structural annotation	PF06152	NA	NA
UHGV-0390677_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0390677_35	UniRef90	UniRef90_A0A8B2X328	Phage portal protein	NA
UHGV-0390677_35	eggNOG-mapper	1321782.HMPREF1986_02262	NA	NA
UHGV-0390677_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0390677_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0390677_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0390677_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0390677_36	UniRef90	UniRef90_A0A8B2WZC5	PBSX family phage terminase large subunit	NA
UHGV-0390677_36	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0390677_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0390677_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0390677_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0390677_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0390677_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0390677_37	PHROG	phrog_2412	NA	unknown function
UHGV-0390677_37	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0390677_37	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0390677_38	PHROG	phrog_11237	NA	unknown function
UHGV-0390677_38	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0390677_39	PHROG	phrog_16126	NA	unknown function
UHGV-0390677_39	eggNOG-mapper	411902.CLOBOL_07208	NA	NA
UHGV-0390677_43	PHROG	phrog_10154	NA	unknown function
UHGV-0390677_43	eggNOG-mapper	1380387.JADM01000008_gene976	NA	NA
UHGV-0390677_47	PHROG	phrog_8538	NA	unknown function
UHGV-0390677_47	eggNOG-mapper	1196322.A370_02189	NA	NA
UHGV-0390677_47	Pfam	PF08271	TFIIB zinc-binding	TF_Zn_Ribbon
UHGV-0390677_51	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0390677_51	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0390677_51	UniRef90	UniRef90_A0A3R6UX09	DNA methylase N-4 (Fragment)	NA
UHGV-0390677_51	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0390677_51	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0390677_51	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0390677_51	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0390677_51	Structural annotation	PF01555	NA	NA
UHGV-0390677_52	KOfam	K24451	zim; modification methylase	NA
UHGV-0390677_52	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0390677_52	UniRef90	UniRef90_A0A2M8Z2W4	DNA methylase	NA
UHGV-0390677_52	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0390677_52	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0390677_52	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0390677_52	Structural annotation	PF02399, PF01555, MF_01821, NF003426, COG0553, COG4627	NA	NA
UHGV-0390677_53	UniRef90	UniRef90_A0A8B3A603	DNA_pol3_beta_2 domain-containing protein	NA
UHGV-0390677_53	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0390677_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0390677_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0390677_54	UniRef90	UniRef90_A0A352BM19	IstB_IS21 domain-containing protein	NA
UHGV-0390677_54	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0390677_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0390677_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0390677_54	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0390677_55	PHROG	phrog_16304	NA	unknown function
UHGV-0390677_55	UniRef90	UniRef90_A0A5Y2LWM7	Helix-turn-helix domain-containing protein (Fragment)	NA
UHGV-0390677_55	eggNOG-mapper	476272.RUMHYD_03358	NA	NA