UHGV-0390778

Genome information

Genome length 35,363 bps

CDS count 53

Completeness 98.32% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0390778
vOTU ID	vOTU-064337
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_3135
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.29
Jumbo phage	No

Genome content
Genome length	35,363 bps
GC content	43.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.57%
Average CDS length	642.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0390778_1	PHROG	phrog_14088	NA	unknown function
UHGV-0390778_1	UniRef90	UniRef90_UPI00117BDD8B	carboxypeptidase	NA
UHGV-0390778_1	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0390778_2	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0390778_2	UniRef90	UniRef90_UPI0006C25E68	NA	NA
UHGV-0390778_2	eggNOG-mapper	1462526.BN990_01190	NA	NA
UHGV-0390778_2	Structural annotation	COG2250	NA	NA
UHGV-0390778_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0390778_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0390778_3	UniRef90	UniRef90_A0A6N7SB16	Helix-turn-helix domain-containing protein	NA
UHGV-0390778_3	eggNOG-mapper	588581.Cpap_1289	PFAM helix-turn-helix domain protein	NA
UHGV-0390778_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0390778_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0390778_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0390778_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0390778_4	UniRef90	UniRef90_A0A6N7SBP0	XRE family transcriptional regulator	NA
UHGV-0390778_4	eggNOG-mapper	457412.RSAG_01182	sequence-specific DNA binding	NA
UHGV-0390778_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0390778_4	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0390778_6	PHROG	phrog_31564	NA	unknown function
UHGV-0390778_7	UniRef90	UniRef90_UPI001F0568C8	glucosaminidase domain-containing protein	NA
UHGV-0390778_7	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0390778_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0390778_7	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0390778_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0390778_9	UniRef90	UniRef90_A0A412G498	Endonuclease	NA
UHGV-0390778_9	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0390778_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0390778_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0390778_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0390778_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0390778_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0390778_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0390778_10	UniRef90	UniRef90_A0A412G4J9	Recombinase RecT	NA
UHGV-0390778_10	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0390778_10	Pfam	PF03837	RecT family	RecT
UHGV-0390778_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0390778_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0390778_10	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0390778_11	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0390778_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0390778_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0390778_12	UniRef90	UniRef90_A0A412G4Q3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0390778_12	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0390778_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0390778_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0390778_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0390778_13	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0390778_13	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0390778_13	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0390778_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0390778_13	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0390778_14	PHROG	phrog_9804	NA	unknown function
UHGV-0390778_14	UniRef90	UniRef90_A0A412G468	Inhibitor_G39P domain-containing protein	NA
UHGV-0390778_14	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0390778_14	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0390778_14	Structural annotation	PF11417	NA	NA
UHGV-0390778_16	PHROG	phrog_2045	NA	unknown function
UHGV-0390778_16	UniRef90	UniRef90_A0A412G4G1	NA	NA
UHGV-0390778_16	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0390778_16	Pfam	PF07505	NA	DUF5131
UHGV-0390778_16	COG	COG4422	NA	NA
UHGV-0390778_16	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0390778_17	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0390778_17	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0390778_17	eggNOG-mapper	1415774.U728_1686	NA	NA
UHGV-0390778_17	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0390778_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0390778_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0390778_18	UniRef90	UniRef90_UPI001F06C5E9	single-stranded DNA-binding protein	NA
UHGV-0390778_18	eggNOG-mapper	545696.HOLDEFILI_00345	Single-stranded DNA-binding protein	NA
UHGV-0390778_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0390778_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0390778_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0390778_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0390778_18	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0390778_19	PHROG	phrog_28936	NA	unknown function
UHGV-0390778_19	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0390778_19	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0390778_20	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0390778_20	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0390778_20	UniRef90	UniRef90_A0A412G4K8	DNA adenine methylase	NA
UHGV-0390778_20	eggNOG-mapper	1123263.AUKY01000122_gene1741	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0390778_20	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0390778_20	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0390778_20	COG	COG0338	DNA-adenine methylase	NA
UHGV-0390778_20	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0390778_21	Structural annotation	PF10571	NA	NA
UHGV-0390778_22	PHROG	phrog_8470	NA	unknown function
UHGV-0390778_22	UniRef90	UniRef90_UPI001184A8E2	PcfJ domain-containing protein	NA
UHGV-0390778_22	eggNOG-mapper	1232449.BAHV02000018_gene1540	PcfJ-like protein	NA
UHGV-0390778_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0390778_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0390778_23	UniRef90	UniRef90_A0A6N7S6V3	Sigma70_r4 domain-containing protein	NA
UHGV-0390778_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0390778_23	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0390778_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0390778_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0390778_25	UniRef90	UniRef90_C7RH97	ParB domain protein nuclease	NA
UHGV-0390778_25	eggNOG-mapper	525919.Apre_0830	ParB-like nuclease domain	NA
UHGV-0390778_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0390778_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0390778_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0390778_25	Structural annotation	PF02195, TIGR00180	NA	NA
UHGV-0390778_26	PHROG	phrog_13321	NA	unknown function
UHGV-0390778_26	UniRef90	UniRef90_A0A316L5W6	Radical SAM protein	NA
UHGV-0390778_26	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0390778_26	COG	COG1533	DNA repair photolyase	NA
UHGV-0390778_26	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-0390778_27	PHROG	phrog_2412	NA	unknown function
UHGV-0390778_27	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0390778_27	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0390778_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0390778_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0390778_28	UniRef90	UniRef90_A0A6N7S6E5	PBSX family phage terminase large subunit	NA
UHGV-0390778_28	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0390778_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0390778_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0390778_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0390778_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0390778_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0390778_29	UniRef90	UniRef90_A0A6N7S5U8	Phage portal protein	NA
UHGV-0390778_29	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0390778_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0390778_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0390778_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0390778_30	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0390778_30	eggNOG-mapper	1134413.ANNK01000120_gene2030	Phage minor capsid protein 2	NA
UHGV-0390778_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0390778_30	COG	COG2369	NA	NA
UHGV-0390778_30	Structural annotation	PF06152, MF_00018, TIGR00608	NA	NA
UHGV-0390778_33	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0390778_33	eggNOG-mapper	1121871.AUAT01000035_gene1288	NA	NA
UHGV-0390778_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0390778_34	UniRef90	UniRef90_A0A6N7S5V0	Phage major capsid protein	NA
UHGV-0390778_34	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0390778_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0390778_34	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0390778_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0390778_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0390778_34	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0390778_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0390778_36	PHROG	phrog_3366	NA	unknown function
UHGV-0390778_36	Structural annotation	PF20536	NA	NA
UHGV-0390778_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0390778_37	UniRef90	UniRef90_A0A6N7S6M4	Minor capsid protein	NA
UHGV-0390778_37	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0390778_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0390778_37	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0390778_38	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-0390778_38	Structural annotation	PF12691	NA	NA
UHGV-0390778_39	PHROG	phrog_3099	NA	unknown function
UHGV-0390778_39	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0390778_39	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0390778_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0390778_40	Structural annotation	PF10666	NA	NA
UHGV-0390778_41	PHROG	phrog_706	NA	unknown function
UHGV-0390778_41	UniRef90	UniRef90_A0A1M6HSL9	Bacteriophage Gp15 protein	NA
UHGV-0390778_41	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0390778_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0390778_41	Structural annotation	PF06854	NA	NA
UHGV-0390778_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0390778_42	UniRef90	UniRef90_A0A6N7S6K2	Phage tail tape measure protein	NA
UHGV-0390778_42	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0390778_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0390778_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0390778_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0390778_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0390778_43	PHROG	phrog_36410	NA	unknown function
UHGV-0390778_43	UniRef90	UniRef90_A0A146LW88	Phage tail protein	NA
UHGV-0390778_43	eggNOG-mapper	1499683.CCFF01000017_gene2564	Phage tail protein	NA
UHGV-0390778_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0390778_43	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0390778_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0390778_44	UniRef90	UniRef90_UPI001D0AB45D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0390778_44	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0390778_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0390778_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0390778_45	PHROG	phrog_1220	head protein	head and packaging
UHGV-0390778_45	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0390778_45	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0390778_45	Structural annotation	PF20747	NA	NA
UHGV-0390778_46	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0390778_46	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0390778_46	UniRef90	UniRef90_UPI001898AD18	collagen-like protein	NA
UHGV-0390778_46	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0390778_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0390778_50	UniRef90	UniRef90_UPI000A41DB27	phosphodiester glycosidase family protein	NA
UHGV-0390778_50	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0390778_50	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0390778_51	PHROG	phrog_1129	holin	lysis
UHGV-0390778_51	UniRef90	UniRef90_A0A6N7S5W6	Holin	NA
UHGV-0390778_51	eggNOG-mapper	1158601.I585_01143	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0390778_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0390778_52	PHROG	phrog_4105	NA	unknown function
UHGV-0390778_52	eggNOG-mapper	1235798.C817_02564	NA	NA
UHGV-0390778_53	UniRef90	UniRef90_UPI00137AA8A9	helix-turn-helix domain-containing protein	NA
UHGV-0390778_53	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0390778_53	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA