UHGV-0391871

Genome information

Genome length 40,859 bps

CDS count 55

Completeness 99.00% (high-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0391871
vOTU ID	vOTU-068057
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2035
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.45
Jumbo phage	No

Genome content
Genome length	40,859 bps
GC content	40.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.00%
Average CDS length	692.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0391871_1	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0391871_1	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0391871_1	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0391871_2	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0391871_2	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0391871_2	UniRef90	UniRef90_A0A2S7YYZ0	Terminase	NA
UHGV-0391871_2	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0391871_2	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0391871_2	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0391871_2	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0391871_2	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0391871_3	PHROG	phrog_20307	NA	unknown function
UHGV-0391871_3	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0391871_3	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0391871_4	PHROG	phrog_21	portal protein	head and packaging
UHGV-0391871_4	UniRef90	UniRef90_A0A2S7YZ05	Phage portal protein	NA
UHGV-0391871_4	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0391871_4	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0391871_4	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0391871_4	COG	COG5511	Phage capsid protein	NA
UHGV-0391871_4	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0391871_5	KOfam	K06904	NA	NA
UHGV-0391871_5	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0391871_5	UniRef90	UniRef90_A0A2S7YZ16	Peptidase	NA
UHGV-0391871_5	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0391871_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0391871_5	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0391871_5	COG	COG3087	Cell division protein FtsN	NA
UHGV-0391871_5	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0391871_6	PHROG	phrog_122	head decoration	head and packaging
UHGV-0391871_6	UniRef90	UniRef90_A0A4Q9TLG5	NA	NA
UHGV-0391871_6	eggNOG-mapper	1235835.C814_03476	NA	NA
UHGV-0391871_6	Pfam	PF09956	NA	DUF2190
UHGV-0391871_6	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0391871_6	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0391871_7	PHROG	phrog_27032	NA	unknown function
UHGV-0391871_7	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0391871_8	PHROG	phrog_222	tail protein	tail
UHGV-0391871_8	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0391871_8	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0391871_8	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0391871_9	PHROG	phrog_17431	NA	unknown function
UHGV-0391871_9	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0391871_9	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0391871_10	PHROG	phrog_290	minor tail protein	tail
UHGV-0391871_10	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0391871_10	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0391871_10	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0391871_10	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0391871_11	PHROG	phrog_27248	NA	unknown function
UHGV-0391871_12	PHROG	phrog_22443	NA	unknown function
UHGV-0391871_12	UniRef90	UniRef90_F5KZN7	Phage tail tape measure protein, lambda family	NA
UHGV-0391871_12	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0391871_12	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0391871_12	COG	COG4913	NA	NA
UHGV-0391871_12	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0391871_13	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0391871_13	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0391871_14	PHROG	phrog_18	minor tail protein	tail
UHGV-0391871_14	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0391871_14	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0391871_14	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0391871_14	COG	COG4672	Phage tail protein	NA
UHGV-0391871_14	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0391871_15	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0391871_15	PHROG	phrog_329	minor tail protein	tail
UHGV-0391871_15	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-0391871_15	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0391871_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0391871_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0391871_15	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0391871_16	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0391871_16	UniRef90	UniRef90_I9NL60	Phage-tail_3 domain-containing protein	NA
UHGV-0391871_16	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0391871_16	COG	COG1511	NA	NA
UHGV-0391871_17	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0391871_17	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0391871_17	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0391871_17	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0391871_17	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0391871_17	COG	COG1511	NA	NA
UHGV-0391871_18	PHROG	phrog_2427	NA	unknown function
UHGV-0391871_19	PHROG	phrog_25213	NA	unknown function
UHGV-0391871_20	PHROG	phrog_1084	NA	unknown function
UHGV-0391871_20	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0391871_21	PHROG	phrog_22483	NA	unknown function
UHGV-0391871_21	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0391871_21	eggNOG-mapper	706434.HMPREF9429_00509	NA	NA
UHGV-0391871_21	Structural annotation	PF17936, NF033814	NA	NA
UHGV-0391871_23	PHROG	phrog_27828	NA	unknown function
UHGV-0391871_23	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0391871_23	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0391871_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0391871_24	PHROG	phrog_435	endolysin	lysis
UHGV-0391871_24	UniRef90	UniRef90_A0A2S7ZCP6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0391871_24	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0391871_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0391871_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0391871_24	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0391871_25	PHROG	phrog_18860	NA	unknown function
UHGV-0391871_26	UniRef90	UniRef90_F5KZP8	Conserved domain protein	NA
UHGV-0391871_27	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0391871_27	UniRef90	UniRef90_F5KZP9	HTH_59 domain-containing protein	NA
UHGV-0391871_27	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0391871_27	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0391871_27	Structural annotation	PF20038, NF040990	NA	NA
UHGV-0391871_29	KOfam	K14059	int; integrase	NA
UHGV-0391871_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0391871_29	UniRef90	UniRef90_F5KZK3	Site-specific recombinase, phage integrase family	NA
UHGV-0391871_29	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0391871_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0391871_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0391871_29	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0391871_30	UniRef90	UniRef90_A0A1M6P9T6	zinc_ribbon_2 domain-containing protein	NA
UHGV-0391871_31	PHROG	phrog_1914	NA	unknown function
UHGV-0391871_31	UniRef90	UniRef90_A0A496P8T2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0391871_31	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0391871_31	COG	COG1592	Rubrerythrin	NA
UHGV-0391871_32	UniRef90	UniRef90_UPI00068C50D9	transcriptional regulator	NA
UHGV-0391871_32	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-0391871_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0391871_32	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0391871_33	UniRef90	UniRef90_A0A2S7YZG3	DNA-binding protein	NA
UHGV-0391871_33	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0391871_33	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0391871_34	PHROG	phrog_6058	NA	unknown function
UHGV-0391871_34	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0391871_35	PHROG	phrog_31038	NA	unknown function
UHGV-0391871_36	PHROG	phrog_29542	NA	unknown function
UHGV-0391871_37	PHROG	phrog_30876	NA	unknown function
UHGV-0391871_37	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-0391871_39	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0391871_40	PHROG	phrog_35266	NA	unknown function
UHGV-0391871_40	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-0391871_41	PHROG	phrog_29844	NA	unknown function
UHGV-0391871_42	PHROG	phrog_16315	NA	unknown function
UHGV-0391871_42	UniRef90	UniRef90_UPI00040F6C65	PcfJ domain-containing protein	NA
UHGV-0391871_42	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0391871_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0391871_42	Structural annotation	PF14284	NA	NA
UHGV-0391871_43	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0391871_43	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0391871_43	UniRef90	UniRef90_A0A096AL19	AAA_23 domain-containing protein	NA
UHGV-0391871_43	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0391871_43	Pfam	PF13476	AAA domain	AAA_23
UHGV-0391871_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0391871_43	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0391871_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0391871_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0391871_45	UniRef90	UniRef90_UPI000F8DC23A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0391871_45	eggNOG-mapper	883156.HMPREF9282_00923	Phage antirepressor protein	NA
UHGV-0391871_45	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0391871_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0391871_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0391871_45	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0391871_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0391871_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0391871_46	UniRef90	UniRef90_A0A811GJA5	Protein RecT	NA
UHGV-0391871_46	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0391871_46	Pfam	PF03837	RecT family	RecT
UHGV-0391871_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0391871_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0391871_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0391871_47	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0391871_47	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-0391871_47	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0391871_47	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0391871_47	Structural annotation	PF12706, MF_01818, NF041851, COG5212	NA	NA
UHGV-0391871_48	PHROG	phrog_29533	NA	unknown function
UHGV-0391871_49	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0391871_49	UniRef90	UniRef90_A0A811GJH8	NA	NA
UHGV-0391871_49	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0391871_49	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0391871_49	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0391871_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0391871_49	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0391871_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0391871_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0391871_50	UniRef90	UniRef90_UPI001A5B77C0	ATP-binding protein	NA
UHGV-0391871_50	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0391871_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0391871_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0391871_50	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0391871_51	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0391871_51	UniRef90	UniRef90_D6KLF0	Prophage Lp2 protein 24	NA
UHGV-0391871_51	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0391871_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0391871_51	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0391871_53	PHROG	phrog_21026	NA	unknown function
UHGV-0391871_54	PHROG	phrog_1672	NA	unknown function
UHGV-0391871_55	PHROG	phrog_1558	NA	unknown function
UHGV-0391871_55	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-0391871_55	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0391871_55	Structural annotation	TIGR01637, COG2739	NA	NA