UHGV-0392050

Genome information

vOTU vOTU-020382

Genome length 31,007 bps

CDS count 54

Completeness 76.30% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0392050
vOTU ID	vOTU-020382
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_3852
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.97
Jumbo phage	No

Genome content
Genome length	31,007 bps
GC content	47.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.41%
Average CDS length	528.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0392050_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0392050_1	PHROG	phrog_10250	NA	unknown function
UHGV-0392050_1	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0392050_1	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0392050_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0392050_1	Structural annotation	PF20441, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0392050_2	PHROG	phrog_64	portal protein	head and packaging
UHGV-0392050_2	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0392050_2	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0392050_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0392050_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0392050_3	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0392050_3	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-0392050_3	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0392050_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0392050_3	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0392050_3	COG	COG2369	NA	NA
UHGV-0392050_3	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0392050_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0392050_4	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0392050_4	eggNOG-mapper	1158602.I590_02569	NA	NA
UHGV-0392050_4	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0392050_4	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0392050_4	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0392050_6	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0392050_6	UniRef90	UniRef90_A0A1H0H3E1	HNH endonuclease	NA
UHGV-0392050_6	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0392050_6	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0392050_6	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0392050_6	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0392050_6	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0392050_6	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0392050_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0392050_7	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0392050_7	Structural annotation	PF06810	NA	NA
UHGV-0392050_8	PHROG	phrog_544	major head protein	head and packaging
UHGV-0392050_8	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0392050_8	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0392050_8	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0392050_9	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0392050_11	PHROG	phrog_17977	NA	unknown function
UHGV-0392050_11	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0392050_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0392050_12	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0392050_12	Structural annotation	PF11367	NA	NA
UHGV-0392050_13	PHROG	phrog_885	major tail protein	tail
UHGV-0392050_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0392050_13	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0392050_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0392050_14	PHROG	phrog_18646	NA	unknown function
UHGV-0392050_14	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0392050_16	PHROG	phrog_23464	NA	unknown function
UHGV-0392050_16	UniRef90	UniRef90_A0A1C6CIN9	Phage-related protein	NA
UHGV-0392050_16	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0392050_16	Pfam	PF05017	TMP repeat	TMP
UHGV-0392050_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0392050_16	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0392050_17	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0392050_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0392050_18	PHROG	phrog_13879	NA	unknown function
UHGV-0392050_18	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0392050_18	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0392050_20	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0392050_20	PHROG	phrog_11157	NA	unknown function
UHGV-0392050_20	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0392050_20	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0392050_20	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0392050_20	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0392050_20	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0392050_20	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-0392050_24	PHROG	phrog_937	hemolysin	other
UHGV-0392050_24	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0392050_25	PHROG	phrog_443	holin	lysis
UHGV-0392050_25	UniRef90	UniRef90_UPI001C3AB75B	Holin	NA
UHGV-0392050_25	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0392050_25	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0392050_25	Structural annotation	PF16945	NA	NA
UHGV-0392050_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0392050_28	PHROG	phrog_7698	endolysin	lysis
UHGV-0392050_28	UniRef90	UniRef90_R5HQL6	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0392050_28	eggNOG-mapper	1519439.JPJG01000059_gene1952	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392050_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0392050_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392050_28	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0392050_29	KOfam	K10947	padR; PadR family transcriptional regulator, regulatory protein PadR	NA
UHGV-0392050_29	UniRef90	UniRef90_A0A6S6XBU7	PadR family transcriptional regulator	NA
UHGV-0392050_29	eggNOG-mapper	1105031.HMPREF1141_0637	Transcriptional regulator PadR-like family	NA
UHGV-0392050_29	Pfam	PF03551	Transcriptional regulator PadR-like family	PadR
UHGV-0392050_29	COG	COG1695	DNA-binding transcriptional regulator, PadR family	NA
UHGV-0392050_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0392050_31	PHROG	phrog_3754	NA	unknown function
UHGV-0392050_31	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0392050_32	PHROG	phrog_21718	NA	unknown function
UHGV-0392050_32	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0392050_33	PHROG	phrog_22984	NA	unknown function
UHGV-0392050_34	PHROG	phrog_16490	NA	unknown function
UHGV-0392050_34	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0392050_35	PHROG	phrog_20016	NA	unknown function
UHGV-0392050_35	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0392050_35	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0392050_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0392050_36	PHROG	phrog_28802	NA	unknown function
UHGV-0392050_36	Structural annotation	PF12510	NA	NA
UHGV-0392050_37	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0392050_38	KOfam	K14059	int; integrase	NA
UHGV-0392050_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0392050_38	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0392050_38	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0392050_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0392050_38	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0392050_38	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0392050_39	PHROG	phrog_806	NA	unknown function
UHGV-0392050_39	UniRef90	UniRef90_A0A355JG63	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0392050_39	eggNOG-mapper	1160721.RBI_I01524	NA	NA
UHGV-0392050_39	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0392050_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0392050_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0392050_42	UniRef90	UniRef90_A0A1C6J7L0	Helix-turn-helix	NA
UHGV-0392050_42	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0392050_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0392050_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0392050_42	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0392050_44	PHROG	phrog_21028	NA	unknown function
UHGV-0392050_44	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0392050_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0392050_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0392050_46	UniRef90	UniRef90_A0A7U0DMG3	Helix-turn-helix transcriptional regulator	NA
UHGV-0392050_46	eggNOG-mapper	1121286.AUMT01000005_gene3314	Helix-turn-helix domain	NA
UHGV-0392050_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0392050_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0392050_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0392050_47	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0392050_50	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0392050_50	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0392050_50	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0392050_50	Pfam	PF13479	AAA domain	AAA_24
UHGV-0392050_50	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0392050_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0392050_51	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0392050_51	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0392050_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0392050_51	Structural annotation	PF05565	NA	NA
UHGV-0392050_52	PHROG	phrog_18107	NA	unknown function
UHGV-0392050_52	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0392050_52	eggNOG-mapper	476272.RUMHYD_01739	NA	NA
UHGV-0392050_52	Structural annotation	PF05037	NA	NA
UHGV-0392050_53	UniRef90	UniRef90_G9YN41	DNA binding domain, excisionase family	NA
UHGV-0392050_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0392050_53	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0392050_53	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA