UHGV-0392589

Genome information

Genome length 18,520 bps

CDS count 21

Completeness 55.17% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0392589
vOTU ID	vOTU-023195
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_6121
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.01
Jumbo phage	No

Genome content
Genome length	18,520 bps
GC content	30.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	93.76%
Average CDS length	828.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0392589_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0392589_1	UniRef90	UniRef90_A0A1C6DLM3	Phage terminase-like protein, large subunit	NA
UHGV-0392589_1	eggNOG-mapper	1262449.CP6013_1038	Terminase	NA
UHGV-0392589_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0392589_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0392589_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0392589_1	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0392589_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0392589_2	UniRef90	UniRef90_UPI001A9B2C46	phage portal protein	NA
UHGV-0392589_2	eggNOG-mapper	632245.CLP_2617	Phage portal protein, HK97 family	NA
UHGV-0392589_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0392589_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0392589_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0392589_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0392589_3	KOfam	K06904	NA	NA
UHGV-0392589_3	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0392589_3	UniRef90	UniRef90_UPI00189AB434	HK97 family phage prohead protease	NA
UHGV-0392589_3	eggNOG-mapper	1187894.I2E8Y9_9CAUD	peptidase activity	NA
UHGV-0392589_3	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0392589_3	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0392589_3	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0392589_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0392589_4	UniRef90	UniRef90_UPI00189A0F03	phage major capsid protein	NA
UHGV-0392589_4	eggNOG-mapper	1262449.CP6013_1042	Phage major capsid protein, HK97 family	NA
UHGV-0392589_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0392589_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0392589_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0392589_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0392589_5	UniRef90	UniRef90_UPI00189E40FF	collagen-like protein	NA
UHGV-0392589_5	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0392589_5	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0392589_6	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0392589_6	UniRef90	UniRef90_UPI0018971C9F	head-tail connector protein	NA
UHGV-0392589_6	eggNOG-mapper	1195236.CTER_5110	Phage gp6-like head-tail connector protein	NA
UHGV-0392589_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0392589_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0392589_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0392589_7	UniRef90	UniRef90_UPI00189C2B5F	phage head closure protein	NA
UHGV-0392589_7	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0392589_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0392589_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0392589_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0392589_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0392589_8	UniRef90	UniRef90_UPI00189AB161	HK97 gp10 family phage protein	NA
UHGV-0392589_8	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0392589_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0392589_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0392589_8	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0392589_9	PHROG	phrog_78	tail terminator	connector
UHGV-0392589_9	UniRef90	UniRef90_T0D5T1	Putative gp10 protein	NA
UHGV-0392589_9	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0392589_9	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0392589_10	PHROG	phrog_88	major tail protein	tail
UHGV-0392589_10	UniRef90	UniRef90_UPI001897D7CF	major tail protein	NA
UHGV-0392589_10	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-0392589_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0392589_10	COG	COG5492	NA	NA
UHGV-0392589_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0392589_11	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0392589_11	Structural annotation	PF06896	NA	NA
UHGV-0392589_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0392589_13	UniRef90	UniRef90_UPI00189C4B70	phage tail tape measure protein	NA
UHGV-0392589_13	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0392589_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0392589_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0392589_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0392589_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0392589_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0392589_14	UniRef90	UniRef90_UPI0015B3D59E	phage tail family protein	NA
UHGV-0392589_14	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0392589_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0392589_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0392589_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0392589_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0392589_15	UniRef90	UniRef90_UPI00189841BA	phage tail protein	NA
UHGV-0392589_15	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0392589_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0392589_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0392589_15	COG	COG4926	Phage-related protein	NA
UHGV-0392589_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0392589_16	PHROG	phrog_6130	NA	unknown function
UHGV-0392589_16	eggNOG-mapper	1347392.CCEZ01000005_gene1247	NA	NA
UHGV-0392589_17	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0392589_17	PHROG	phrog_19519	neck protein	connector
UHGV-0392589_17	UniRef90	UniRef90_UPI0019058045	BppU family phage baseplate upper protein	NA
UHGV-0392589_17	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0392589_17	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0392589_17	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0392589_17	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0392589_18	PHROG	phrog_1863	NA	unknown function
UHGV-0392589_18	eggNOG-mapper	1414720.CBYM010000001_gene713	NA	NA
UHGV-0392589_19	PHROG	phrog_20258	NA	unknown function
UHGV-0392589_19	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA
UHGV-0392589_20	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0392589_20	PHROG	phrog_670	endolysin	lysis
UHGV-0392589_20	UniRef90	UniRef90_UPI00189B7E50	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392589_20	eggNOG-mapper	545697.HMPREF0216_00781	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392589_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0392589_20	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0392589_20	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0392589_20	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-0392589_21	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0392589_21	UniRef90	UniRef90_UPI001898748B	Ltp family lipoprotein	NA
UHGV-0392589_21	eggNOG-mapper	702450.CUW_1238	Host cell surface-exposed lipoprotein	NA
UHGV-0392589_21	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0392589_21	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0392589_21	Structural annotation	PF07553, MF_01114, NF001062	NA	NA