UHGV-0392874

Genome information

vOTU vOTU-019721

Genome length 31,203 bps

CDS count 46

Completeness 76.76% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0392874
vOTU ID	vOTU-019721
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_2980
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.35
Jumbo phage	No

Genome content
Genome length	31,203 bps
GC content	40.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.33%
Average CDS length	635.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0392874_2	KOfam	K23518	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	NA
UHGV-0392874_2	UniRef90	UniRef90_A0A2N0UKU7	O-acetyl-ADP-ribose deacetylase	NA
UHGV-0392874_2	eggNOG-mapper	1519439.JPJG01000078_gene911	Macro domain	NA
UHGV-0392874_2	Pfam	PF01661	Macro domain	Macro
UHGV-0392874_2	NCBIFam	NF001664.0	O-acetyl-ADP-ribose deacetylase	NA
UHGV-0392874_2	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0392874_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0392874_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0392874_3	UniRef90	UniRef90_A0A373KZS3	XRE family transcriptional regulator	NA
UHGV-0392874_3	eggNOG-mapper	411471.SUBVAR_06679	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0392874_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0392874_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0392874_3	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0392874_4	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0392874_4	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0392874_4	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0392874_4	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-0392874_4	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0392874_4	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0392874_4	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0392874_4	COG	COG0338	DNA-adenine methylase	NA
UHGV-0392874_4	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0392874_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0392874_5	PHROG	phrog_20388	endolysin	lysis
UHGV-0392874_5	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392874_5	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392874_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0392874_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0392874_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0392874_5	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0392874_6	PHROG	phrog_443	holin	lysis
UHGV-0392874_6	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0392874_6	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0392874_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0392874_6	Structural annotation	PF16945	NA	NA
UHGV-0392874_7	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0392874_9	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0392874_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0392874_9	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0392874_10	PHROG	phrog_11105	NA	unknown function
UHGV-0392874_12	PHROG	phrog_18110	NA	unknown function
UHGV-0392874_12	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0392874_12	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0392874_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0392874_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0392874_12	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0392874_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0392874_13	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0392874_13	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0392874_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0392874_13	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0392874_14	PHROG	phrog_19074	NA	unknown function
UHGV-0392874_14	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-0392874_14	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0392874_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0392874_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0392874_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0392874_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0392874_15	PHROG	phrog_37750	NA	unknown function
UHGV-0392874_15	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0392874_15	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-0392874_16	PHROG	phrog_706	NA	unknown function
UHGV-0392874_16	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0392874_16	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0392874_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0392874_16	Structural annotation	PF06854	NA	NA
UHGV-0392874_17	PHROG	phrog_4450	NA	unknown function
UHGV-0392874_17	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0392874_17	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0392874_17	Pfam	PF20378	NA	DUF6673
UHGV-0392874_17	Structural annotation	PF20378	NA	NA
UHGV-0392874_18	PHROG	phrog_3099	NA	unknown function
UHGV-0392874_18	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0392874_18	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0392874_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0392874_19	PHROG	phrog_3266	tail completion	connector
UHGV-0392874_19	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0392874_19	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0392874_19	Structural annotation	PF12691	NA	NA
UHGV-0392874_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0392874_20	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0392874_20	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0392874_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0392874_20	Structural annotation	PF11114	NA	NA
UHGV-0392874_21	PHROG	phrog_3366	NA	unknown function
UHGV-0392874_21	eggNOG-mapper	1151292.QEW_4533	NA	NA
UHGV-0392874_21	Pfam	PF20536	NA	DUF6751
UHGV-0392874_21	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0392874_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0392874_22	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0392874_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0392874_23	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0392874_23	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0392874_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0392874_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0392874_24	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0392874_24	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0392874_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0392874_24	Structural annotation	PF06810	NA	NA
UHGV-0392874_25	eggNOG-mapper	663278.Ethha_0498	NA	NA
UHGV-0392874_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0392874_26	UniRef90	UniRef90_A0A1C6IA10	Phage minor capsid protein 2	NA
UHGV-0392874_26	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0392874_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0392874_26	COG	COG2369	NA	NA
UHGV-0392874_26	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0392874_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0392874_27	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0392874_27	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0392874_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0392874_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0392874_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0392874_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0392874_28	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0392874_28	eggNOG-mapper	1105031.HMPREF1141_0088	phage terminase, large subunit, PBSX family	NA
UHGV-0392874_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0392874_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0392874_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0392874_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0392874_30	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0392874_30	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0392874_30	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0392874_30	eggNOG-mapper	742733.HMPREF9469_02883	Transcription termination factor nusG	NA
UHGV-0392874_30	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0392874_30	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0392874_30	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0392874_31	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0392874_31	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0392874_31	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0392874_31	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0392874_31	Structural annotation	PF11985	NA	NA
UHGV-0392874_32	PHROG	phrog_25462	NA	unknown function
UHGV-0392874_32	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0392874_32	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0392874_32	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0392874_33	eggNOG-mapper	663278.Ethha_0085	NA	NA
UHGV-0392874_34	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0392874_34	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0392874_34	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0392874_34	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0392874_34	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0392874_34	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0392874_35	PHROG	phrog_286	NA	unknown function
UHGV-0392874_35	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0392874_35	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0392874_35	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0392874_35	Structural annotation	PF06252	NA	NA
UHGV-0392874_36	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0392874_37	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0392874_37	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0392874_37	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0392874_37	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0392874_37	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0392874_37	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0392874_37	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0392874_39	PHROG	phrog_5671	NA	unknown function
UHGV-0392874_39	eggNOG-mapper	552398.HMPREF0866_03130	NA	NA
UHGV-0392874_41	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0392874_41	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0392874_41	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0392874_41	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0392874_41	Pfam	PF13401	AAA domain	AAA_22
UHGV-0392874_41	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0392874_41	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0392874_42	PHROG	phrog_310	transposase	integration and excision
UHGV-0392874_42	UniRef90	UniRef90_A0A373KYW6	MerR family transcriptional regulator	NA
UHGV-0392874_42	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0392874_42	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0392874_42	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0392874_42	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0392874_42	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0392874_42	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0392874_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0392874_45	UniRef90	UniRef90_A0A1C6I6F2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0392874_45	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0392874_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0392874_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0392874_45	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0392874_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0392874_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0392874_46	UniRef90	UniRef90_A0A1C6I863	HTH-type transcriptional regulator immR	NA
UHGV-0392874_46	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0392874_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0392874_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0392874_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0392874_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0392874_46	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA