UHGV-0398978

Genome information

Genome length 33,989 bps

CDS count 53

Completeness 99.08% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0398978
vOTU ID	vOTU-009733
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS698742\|NODE_12_length_33989_cov_20.115312
BioSample	SAMEA3323708
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.09
Jumbo phage	No

Genome content
Genome length	33,989 bps
GC content	58.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.58%
Average CDS length	603.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0398978_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0398978_1	UniRef90	UniRef90_A0A1F8UPJ2	Terminase	NA
UHGV-0398978_1	eggNOG-mapper	1226322.HMPREF1545_00112	Phage terminase, small subunit	NA
UHGV-0398978_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0398978_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0398978_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0398978_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0398978_2	UniRef90	UniRef90_U2R2I8	Putative phage terminase, large subunit	NA
UHGV-0398978_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0398978_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0398978_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0398978_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0398978_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0398978_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0398978_3	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0398978_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0398978_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0398978_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0398978_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0398978_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0398978_4	KOfam	K06904	NA	NA
UHGV-0398978_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0398978_4	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0398978_4	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0398978_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0398978_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0398978_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0398978_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0398978_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0398978_5	UniRef90	UniRef90_U2R3I5	Phage capsid family protein	NA
UHGV-0398978_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0398978_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0398978_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0398978_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0398978_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0398978_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0398978_6	PHROG	phrog_2550	NA	unknown function
UHGV-0398978_6	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0398978_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0398978_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0398978_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0398978_7	UniRef90	UniRef90_U2R2J1	Putative phage head-tail adaptor	NA
UHGV-0398978_7	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0398978_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0398978_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0398978_8	UniRef90	UniRef90_UPI0003B47CD3	HK97 gp10 family phage protein	NA
UHGV-0398978_8	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0398978_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0398978_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0398978_9	PHROG	phrog_78	tail terminator	connector
UHGV-0398978_9	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0398978_9	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0398978_9	Structural annotation	PF20765	NA	NA
UHGV-0398978_10	PHROG	phrog_88	major tail protein	tail
UHGV-0398978_10	UniRef90	UniRef90_U2R3I9	Phage major tail protein, phi13 family	NA
UHGV-0398978_10	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0398978_10	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0398978_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0398978_10	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0398978_11	PHROG	phrog_709	NA	unknown function
UHGV-0398978_11	eggNOG-mapper	1226322.HMPREF1545_00122	NA	NA
UHGV-0398978_11	Structural annotation	PF11836	NA	NA
UHGV-0398978_12	PHROG	phrog_3033	NA	unknown function
UHGV-0398978_12	UniRef90	UniRef90_D9R5H0	Phage-like protein	NA
UHGV-0398978_12	eggNOG-mapper	1226322.HMPREF1545_00123	NA	NA
UHGV-0398978_13	PHROG	phrog_23464	NA	unknown function
UHGV-0398978_13	UniRef90	UniRef90_A0A7X5ECT4	Phage tail tape measure protein (Fragment)	NA
UHGV-0398978_13	eggNOG-mapper	1226322.HMPREF1545_00124	Phage tail tape measure protein TP901	NA
UHGV-0398978_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0398978_13	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-0398978_14	PHROG	phrog_1194	NA	unknown function
UHGV-0398978_14	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0398978_14	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0398978_15	PHROG	phrog_32744	NA	unknown function
UHGV-0398978_15	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0398978_15	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0398978_16	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-0398978_16	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0398978_16	Structural annotation	PF18459	NA	NA
UHGV-0398978_17	PHROG	phrog_4628	tail fiber assembly	tail
UHGV-0398978_17	UniRef90	UniRef90_UPI001C3AE76E	Phage tail assembly chaperone	NA
UHGV-0398978_17	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-0398978_17	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0398978_18	PHROG	phrog_27545	NA	unknown function
UHGV-0398978_18	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0398978_18	eggNOG-mapper	1226322.HMPREF1545_00129	NA	NA
UHGV-0398978_20	PHROG	phrog_23092	NA	unknown function
UHGV-0398978_20	eggNOG-mapper	1226322.HMPREF1545_00131	NA	NA
UHGV-0398978_21	PHROG	phrog_13256	NA	unknown function
UHGV-0398978_21	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0398978_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0398978_22	PHROG	phrog_18955	NA	unknown function
UHGV-0398978_22	UniRef90	UniRef90_A0A7X3AR04	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0398978_22	eggNOG-mapper	1226322.HMPREF1545_00133	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0398978_22	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0398978_22	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0398978_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0398978_22	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0398978_22	Structural annotation	PF09992, PF01510, PF18342, NF008758, NF040678, COG5632, COG4632, COG4991	NA	NA
UHGV-0398978_23	KOfam	K14059	int; integrase	NA
UHGV-0398978_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0398978_23	UniRef90	UniRef90_U2R3F4	Site-specific recombinase, phage integrase family	NA
UHGV-0398978_23	eggNOG-mapper	1226322.HMPREF1545_00081	Phage integrase family	NA
UHGV-0398978_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0398978_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0398978_23	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0398978_25	PHROG	phrog_33872	NA	unknown function
UHGV-0398978_26	UniRef90	UniRef90_UPI0008AA749C	zinc ribbon domain-containing protein	NA
UHGV-0398978_26	eggNOG-mapper	1226322.HMPREF1545_00084	NA	NA
UHGV-0398978_26	Structural annotation	NF038294	NA	NA
UHGV-0398978_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0398978_27	UniRef90	UniRef90_U2SBU8	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0398978_27	eggNOG-mapper	1226322.HMPREF1545_00085	sequence-specific DNA binding	NA
UHGV-0398978_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0398978_27	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0398978_28	PHROG	phrog_87	metallo-protease	other
UHGV-0398978_28	UniRef90	UniRef90_U2R3F8	Toxin-antitoxin system, toxin component domain protein	NA
UHGV-0398978_28	eggNOG-mapper	1226322.HMPREF1545_00086	NA	NA
UHGV-0398978_28	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0398978_28	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0398978_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0398978_29	UniRef90	UniRef90_U2QJH1	Bacteriophage CI repressor protein	NA
UHGV-0398978_29	eggNOG-mapper	1226322.HMPREF1545_00087	sequence-specific DNA binding	NA
UHGV-0398978_29	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0398978_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0398978_29	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0398978_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0398978_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0398978_32	UniRef90	UniRef90_U2SBV3	DNA-binding helix-turn-helix protein	NA
UHGV-0398978_32	eggNOG-mapper	1226322.HMPREF1545_00090	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0398978_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0398978_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0398978_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0398978_34	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0398978_34	UniRef90	UniRef90_U2QJH6	DNA-binding helix-turn-helix protein	NA
UHGV-0398978_34	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0398978_34	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0398978_34	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0398978_34	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0398978_37	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0398978_37	UniRef90	UniRef90_UPI001BB48497	helix-turn-helix domain-containing protein	NA
UHGV-0398978_37	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0398978_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0398978_37	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0398978_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0398978_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0398978_38	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-0398978_38	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0398978_38	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0398978_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0398978_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0398978_38	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0398978_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0398978_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0398978_40	UniRef90	UniRef90_U2QJH9	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0398978_40	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0398978_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-0398978_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0398978_40	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0398978_41	PHROG	phrog_15609	NA	unknown function
UHGV-0398978_41	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-0398978_41	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-0398978_41	Pfam	PF11300	NA	DUF3102
UHGV-0398978_41	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0398978_41	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0398978_42	PHROG	phrog_36399	NA	unknown function
UHGV-0398978_42	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0398978_43	PHROG	phrog_8470	NA	unknown function
UHGV-0398978_43	UniRef90	UniRef90_UPI00177B40E0	PcfJ domain-containing protein	NA
UHGV-0398978_43	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0398978_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0398978_43	Structural annotation	PF14284	NA	NA
UHGV-0398978_45	eggNOG-mapper	693746.OBV_19880	NA	NA
UHGV-0398978_47	PHROG	phrog_924	NA	unknown function
UHGV-0398978_47	UniRef90	UniRef90_U2SKB7	NA	NA
UHGV-0398978_47	Pfam	PF04448	NA	DUF551
UHGV-0398978_48	PHROG	phrog_25732	NA	unknown function
UHGV-0398978_51	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0398978_51	eggNOG-mapper	1226322.HMPREF1545_00109	NA	NA
UHGV-0398978_51	Structural annotation	PF01446	NA	NA
UHGV-0398978_52	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0398978_52	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0398978_52	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0398978_52	Structural annotation	PF14205	NA	NA
UHGV-0398978_53	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0398978_53	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0398978_53	UniRef90	UniRef90_U2R3I0	HNH endonuclease domain protein	NA
UHGV-0398978_53	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0398978_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0398978_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0398978_53	Structural annotation	TIGR02646	NA	NA