UHGV-0430497

Genome information

vOTU vOTU-031977

Genome length 30,956 bps

CDS count 49

Completeness 71.96% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0430497
vOTU ID	vOTU-031977
vOTU representative	Yes
Source dataset	HuVirDB
Original genome ID	ERS698693\|NODE_7_length_31011_cov_15.640490
BioSample	SAMEA3323659
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.27
Jumbo phage	No

Genome content
Genome length	30,956 bps
GC content	53.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.01%
Average CDS length	571.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0430497_1	PHROG	phrog_5182	endolysin	lysis
UHGV-0430497_1	UniRef90	UniRef90_UPI00101EC16A	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0430497_1	eggNOG-mapper	1230342.CTM_17062	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0430497_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0430497_2	PHROG	phrog_263	holin	lysis
UHGV-0430497_2	UniRef90	UniRef90_A0A0S2W627	Phage holin	NA
UHGV-0430497_2	eggNOG-mapper	1297617.JPJD01000099_gene2175	SPP1 phage holin	NA
UHGV-0430497_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0430497_2	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0430497_2	Structural annotation	PF04688	NA	NA
UHGV-0430497_3	PHROG	phrog_937	hemolysin	other
UHGV-0430497_3	eggNOG-mapper	1297617.JPJD01000099_gene2176	NA	NA
UHGV-0430497_4	UniRef90	UniRef90_A0A1C6J873	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0430497_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0430497_5	PHROG	phrog_1123	NA	unknown function
UHGV-0430497_5	UniRef90	UniRef90_A0A858BT04	DNA gyrase	NA
UHGV-0430497_5	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-0430497_5	Structural annotation	PF04703, MF_01804, TIGR00373, COG1695	NA	NA
UHGV-0430497_7	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0430497_7	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0430497_7	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0430497_7	Pfam	PF04404	ERF superfamily	ERF
UHGV-0430497_7	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0430497_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0430497_8	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0430497_8	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0430497_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0430497_9	PHROG	phrog_7566	NA	unknown function
UHGV-0430497_9	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0430497_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0430497_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0430497_10	UniRef90	UniRef90_UPI0009521D59	single-stranded DNA-binding protein	NA
UHGV-0430497_10	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-0430497_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0430497_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0430497_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0430497_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0430497_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0430497_11	PHROG	phrog_15768	NA	unknown function
UHGV-0430497_11	UniRef90	UniRef90_A0A1C6J8D5	NA	NA
UHGV-0430497_11	Pfam	PF19808	NA	DUF6291
UHGV-0430497_11	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0430497_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0430497_11	Structural annotation	PF19808	NA	NA
UHGV-0430497_12	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0430497_12	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0430497_12	eggNOG-mapper	768704.Desmer_4473	NA	NA
UHGV-0430497_12	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0430497_13	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0430497_13	Structural annotation	PF20987	NA	NA
UHGV-0430497_16	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0430497_20	PHROG	phrog_924	NA	unknown function
UHGV-0430497_20	UniRef90	UniRef90_U2SKB7	NA	NA
UHGV-0430497_20	Pfam	PF04448	NA	DUF551
UHGV-0430497_20	Structural annotation	NF041588	NA	NA
UHGV-0430497_21	UniRef90	UniRef90_A0A2U1BEG9	Helix-turn-helix protein	NA
UHGV-0430497_21	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0430497_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0430497_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0430497_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0430497_25	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0430497_25	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0430497_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0430497_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0430497_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0430497_26	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0430497_26	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0430497_26	Structural annotation	PF13542	NA	NA
UHGV-0430497_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0430497_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0430497_27	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0430497_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0430497_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0430497_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0430497_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0430497_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0430497_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0430497_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0430497_28	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0430497_28	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0430497_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0430497_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0430497_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0430497_29	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0430497_29	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0430497_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0430497_29	COG	COG2369	NA	NA
UHGV-0430497_29	Structural annotation	PF06152	NA	NA
UHGV-0430497_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0430497_30	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0430497_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0430497_31	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0430497_31	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0430497_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0430497_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0430497_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0430497_31	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0430497_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0430497_32	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0430497_33	PHROG	phrog_3366	NA	unknown function
UHGV-0430497_33	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0430497_33	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0430497_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0430497_34	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0430497_34	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0430497_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0430497_34	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0430497_35	PHROG	phrog_3266	tail completion	connector
UHGV-0430497_35	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0430497_35	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0430497_35	Structural annotation	PF12691	NA	NA
UHGV-0430497_36	PHROG	phrog_3099	NA	unknown function
UHGV-0430497_36	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0430497_36	Structural annotation	TIGR02126	NA	NA
UHGV-0430497_37	PHROG	phrog_11299	NA	unknown function
UHGV-0430497_37	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0430497_37	Structural annotation	PF20378	NA	NA
UHGV-0430497_38	PHROG	phrog_706	NA	unknown function
UHGV-0430497_38	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0430497_38	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0430497_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0430497_38	Structural annotation	PF06854	NA	NA
UHGV-0430497_39	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0430497_39	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0430497_39	UniRef90	UniRef90_A0A101WJ14	Antitoxin HicB	NA
UHGV-0430497_39	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0430497_39	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0430497_39	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0430497_39	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0430497_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0430497_40	UniRef90	UniRef90_A0A1C6JAZ8	Phage-related protein	NA
UHGV-0430497_40	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0430497_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0430497_41	PHROG	phrog_1194	NA	unknown function
UHGV-0430497_41	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0430497_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0430497_42	PHROG	phrog_32744	NA	unknown function
UHGV-0430497_42	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0430497_42	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0430497_43	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0430497_43	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-0430497_44	PHROG	phrog_24451	NA	unknown function
UHGV-0430497_44	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0430497_45	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0430497_45	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0430497_45	UniRef90	UniRef90_A0A1C6JA86	Collagen triple helix repeat (20 copies)	NA
UHGV-0430497_45	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0430497_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0430497_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0430497_47	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0430497_49	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0430497_49	PHROG	phrog_18955	NA	unknown function
UHGV-0430497_49	UniRef90	UniRef90_UPI0018AC8C0A	peptidoglycan-binding protein	NA
UHGV-0430497_49	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0430497_49	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0430497_49	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0430497_49	COG	COG3108	NA	NA